Amplifies the entire genus
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01-16S, 03-16S-Itr-23S, 04-16S-Itr-23S, 08-fabH, 18-groEL, 23-lpnAa, 25-mdh, 30-prfb and 35-tpiA.
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Amplifies clade 1 but not clade 2
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05-aroA, 07-dnaA, 11-fopA-inaa, 12-fopA-outa, 13-fopAa, 14-FTM19b, 15-FTM19, 19-iglCac, 22-lpnAa, 26-mutS, 27-parCc, 31-putA, 36-tpiA, 37-trpE and 38-uup.
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Amplifies clade 1 but no other Francisella species.
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11-fopA-ina, 14-FtM19 and 15-FtM19a
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Amplifies clade 1 as well as F. hispaniensis and W. persica
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05-aroA, 07-dnaA, 12-fopA-outa, 27-parCc and 36-tpiA.
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Amplifies clade 1 as well as F. hispaniensis
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13-fopAa, 19-iglCc, 22-lpnA, 31-putA, 37-trpE and 38-uup.
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Amplifies clade 1 as well as W. persica
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26-mutS
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Amplifies clade 2 but not clade 1
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10-fopA
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Amplifies noatunensis but not the other species
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24-lpnB
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Amplifies all isolates except some certain species.
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02-16S-Itr-23S, 06-atpA, 09-fopA, 29-pgm, 32-rpoA, 33-rpoB and 34-sdhA.
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Amplifies all except F. hispaniensis and W. persica
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09-fopA
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Amplifies all except F. hispaniensis
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33-rpoB
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Amplifies all except F. tularensis, W. persica and F. hispaniensis
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34-sdhA
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Amplifies all except W. persica
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02-16S-Itr-23S, 29-pgm
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Amplifies all except F. noatunensis subsp. orientalis
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06-atpA
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Amplifies all except F. noatunensis
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32-rpoA
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Markers with data missing for clade 2 and W. persica
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16-FTT0376a, 17-FTT0523a, 20-ISFtu2b and 28-pdpDb.
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Amplifies only F. tularensis (only when including the probe).
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16-FTT0376a and 17-FTT0523a
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Amplifies F. tularensis subsp. mediasiatica, F. tularensis subsp.holarctica and 6/7 F. tularensis subsp. novicida.
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28-pdpDb
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Amplifies isolates from all clade 1 species as well as W. persica.
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20-ISFtu2b
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Marker with missing sequences as well as mismatches in almost all subspecies represented.
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21-ISFtu2a
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