Primer | Sequence (5′-3′) | Amplicon (bp) | Cycling conditions | Reference |
---|---|---|---|---|
Multiplex PCR: | ||||
LES1nestF | tttggtgatgatcggcttagc | 289 | 95°C, 4 min then 30 cycles: 95°C, 30 s; 58°C, 30 s; 72°C, 30 s; final extension step, 72°C, 7 min; | [25] |
LES1nestR | tgtggaagcgatcagtct | Â | Â | Â |
Clust6nestF | ggatcgacgtggcataatctg | 410 | Â | [25] |
Clust6nestR | acgattctccggcatgcagcg | Â | Â | Â |
4tot1F | gctcatgagtggctgacaac | 105 | Â | This study |
4tot1R | tcttgggcagagaaccattc | Â | Â | Â |
Q-PCR: | ||||
2pro3F | caagccctgtctggattttc | 102 | 95°C, 10 min; then 40 cycles: 95°C, 10 s; 60°C, 15 s; 72°C s. | This study |
2pro3R | gagacaggttgggagggagt | Â | Â | Â |
3tot1F | cgcaggtaccaccagacttt | 122 | Â | This study |
3tot1R | catgtccagcaggttcaaaa | Â | Â | Â |
3pro3F | gcggatgttctcaaacgaat | 134 | Â | This study |
3pro3R | cgggagaagcaatgacctac | Â | Â | Â |
4tot1F | gctcatgagtggctgacaac | 105 | Â | This study |
4tot1R | tcttgggcagagaaccattc | Â | Â | Â |
4pro3F | tcgtgctgtgctgatctttt | 172 | Â | This study |
4pro3R | agcagtgccagttgatgttg | Â | Â | Â |
Preparation of DIG-labeled probes: | ||||
φ2intDIGF | tgcctatctaacggggttca | 1097 | 95°C, 4 min. 30 cycles: 95°C, 30 s; 55°C, 30 s; 72°C, 1 min s; final extension step, 72°C, 7 min | This study |
φ2intDIGR | gaagcaaccgagaagtggag |  |  | |
φ3intDIGF | ggatcatgtagcgggaaaga | 874 | This study | |
φ3intDIGR | agaacctggcgaaagtctga |  |  | |
φ4cIDIGF | atcgttaattggcacggaat | 893 | This study | |
φ4cIDIGR | acagcaacggatttccactc |  |  |