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Table 3 Bacterial strains and sources

From: Differential infection properties of three inducible prophages from an epidemic strain of Pseudomonas aeruginosa

Strain (1Clone type)

Reference/source

Laboratory P. aeruginosa strains:

PAO1(W)

[2]

PAO1 pilA-; PAO1 pilU-; PAO1 pilT-2

[47]

PA14(A)

[48]

Clinical LES isolates:

LESB 58 (T) - Sequenced isolate

[16]

LES 431 (T) - Lacks LES prophage 2

[49]

Anomalous LES isolates3:

O69574 (T); 0521 (T); 43513 (T); 079444 (T); 0342 (T).

[50]

P. aeruginosa isolates from keratitis patients4:

39015 (B); 39115 (A); 39103 (A2); 39145 (A3); 39053 (A5); 39135 (C); 39016 (D); 39421 (F); 39061 (I); 39284 (L); 39376 (U); 39129 (V).

[51]

P. aeruginosa isolates from non-LES infected CF patients:

CHILDREN: AH23 (B); AH4 (A); AH19 (A3); AH14 (C); AH1 (D); AH6 (L); AH9 (U); AH7 (A4);

AHCH5

ADULTS: NL28 (A); NL20 (C); NL25 (F); NL16 (U); NL21 (A4); NL14 (A7).

RLUH6

Environmental Pseudomonas spp:

Strain

P. aeruginosa

159

RJ7

P. fluorescens

WC5365; F113; ATCC 17400; pf5; pf01.

 

P. syringae

‘tomato’ DC300; B728a

 

P. syringae pv. Coriandricola

Ccola

 

P. syringae pv. maculocola

M4

 

P. syringae pv. antirrhini

152E

 

P. putida

KT2440; Paw340

 

P. cichori

907

 

P. avellanae

48

 

P. phaseiolicola

1448A

 

P. entomophila

L48

 

P. marginalis

247

 

P. corrugata

2445

 

P. tolaasii

2192 T

 

P. glycinea

49a/90

 

P. lachrymans

789

 

P. agarici

2472

 

P. viridiflava

2848

 

B. cenocepacia

K56-2; J2315.

[52]

B. multivorans

F-A1-1; LMG 13010.

 
  1. 1Clones typed using the Clondiag tube array system [51]; 2 PAO1 pil mutants acquired from Angus Buckling, University of Exeter. 3Isolates classified as anomalous following negative diagnostic PCR result for one of two specific target sequences, but identified as LES using the tube array system. These isolates were also missing one or more LES prophage. 4 Strains isolated from Keratitis patients from several hospitals across the UK. 5 AHCH: Isolates collected from child CF patients attending the Alder-Hey Children’s Hospital, Liverpool. 6 RLUH: Isolates collected from adult CF patients attending the Royal Liverpool University Hospital. 7 RJ -Environmental isolates of several Pseudomonas species donated by R Jackson, University of Reading.