Skip to main content

Table 4 Microorganisms with type II PKS gene clusters from the analysis of 319 actinobacterial genomes

From: PKMiner: a database for exploring type II polyketide synthases

Genus Species Size (bp) # of Type II PKSs Polyketide Chemotype Reference
     Unc Ang Ant Ben Pen Tet Aur  
Amycolatopsis Amycolatopsis mediterranei U32 10,236,715 6      1    [23]
Catenulispora Catenulispora acidiphila DSM 44928 10,467,782 18   1   1 1    
Cellulomonas Cellulomonas flavigena DSM 20109 4,123,179 4      1    
Frankia Frankia alni str. ACN14A 7,497,934 5      1    [24]
Frankia Frankia sp. CcI3 5,433,628 17 1    1 1    [24]
Frankia Frankia sp. EAN1pec 8,982,042 5      1    [24]
Frankia Frankia sp. EuI1c 8,815,781 12     1 1    
Frankia Frankia symbiont of Datisca glomerata 5,323,186 15      3    
Geodermatophilus Geodermatophilus obscurus DSM 43160 5,322,497 6      1    
Micromonospora Micromonospora aurantiaca ATCC 27029 7,025,559 15    1   1    
Micromonospora Micromonospora sp. L5 6,962,533 15    1   1    
Nocardiopsis Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 5,767,958 3 1        
Saccharomonospora Saccharomonospora viridis DSM 43017 4,308,349 6      1    
Salinispora Salinispora arenicola CNS-205 5,786,361 6      1    [25]
Salinispora Salinispora tropica CNB-440 5,183,331 10 1     1    [26]
Streptomyces Streptomyces avermitilis MA-4680 9,025,608 11   1    1    [27]
Streptomyces Streptomyces coelicolor A3(2) 8,667,507 12     1 1    [28]
Streptomyces Streptomyces rochei plasmid pSLA2-L DNA 210,614 6     1     [29]
Streptomyces Streptomyces scabiei 87.22 10,148,695 6      1    
Streptomyces Streptomyces sp. SirexAA-E 7,414,440 17   2    1    
Streptomyces Streptomyces violaceusniger Tu 4113 10,657,107 6      1    
Streptosporangium Streptosporangium roseum DSM 43021 10,341,314 6      1    
Thermobifida Thermobifida fusca YX 3,642,249 7   1       
Thermomonospora Thermomonospora curvata DSM 43183 5,639,016 7     1     
Verrucosispora Verrucosispora maris AB-18-032 6,673,976 10 1     1    
  1. Unc-unclassified, Ang-Angucyclines, Ant-Anthracyclines, Ben- Benzoisochromanequinones, Pen- Pentangular polyphenols, Tet- Tetracenomycins, Aur- Tetracyclines/aureolic acids.
  2. For each microorganism with type II PKS gene cluster, this table shows genome size, number of type II PKSs, predicted aromatic polyketide chemotype and reference.