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Table 4 Microorganisms with type II PKS gene clusters from the analysis of 319 actinobacterial genomes

From: PKMiner: a database for exploring type II polyketide synthases

Genus

Species

Size (bp)

# of Type II PKSs

Polyketide Chemotype

Reference

    

Unc

Ang

Ant

Ben

Pen

Tet

Aur

 

Amycolatopsis

Amycolatopsis mediterranei U32

10,236,715

6

    

1

  

[23]

Catenulispora

Catenulispora acidiphila DSM 44928

10,467,782

18

 

1

 

1

1

   

Cellulomonas

Cellulomonas flavigena DSM 20109

4,123,179

4

    

1

   

Frankia

Frankia alni str. ACN14A

7,497,934

5

    

1

  

[24]

Frankia

Frankia sp. CcI3

5,433,628

17

1

  

1

1

  

[24]

Frankia

Frankia sp. EAN1pec

8,982,042

5

    

1

  

[24]

Frankia

Frankia sp. EuI1c

8,815,781

12

   

1

1

   

Frankia

Frankia symbiont of Datisca glomerata

5,323,186

15

    

3

   

Geodermatophilus

Geodermatophilus obscurus DSM 43160

5,322,497

6

    

1

   

Micromonospora

Micromonospora aurantiaca ATCC 27029

7,025,559

15

  

1

 

1

   

Micromonospora

Micromonospora sp. L5

6,962,533

15

  

1

 

1

   

Nocardiopsis

Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111

5,767,958

3

1

       

Saccharomonospora

Saccharomonospora viridis DSM 43017

4,308,349

6

    

1

   

Salinispora

Salinispora arenicola CNS-205

5,786,361

6

    

1

  

[25]

Salinispora

Salinispora tropica CNB-440

5,183,331

10

1

   

1

  

[26]

Streptomyces

Streptomyces avermitilis MA-4680

9,025,608

11

 

1

  

1

  

[27]

Streptomyces

Streptomyces coelicolor A3(2)

8,667,507

12

   

1

1

  

[28]

Streptomyces

Streptomyces rochei plasmid pSLA2-L DNA

210,614

6

   

1

   

[29]

Streptomyces

Streptomyces scabiei 87.22

10,148,695

6

    

1

   

Streptomyces

Streptomyces sp. SirexAA-E

7,414,440

17

 

2

  

1

   

Streptomyces

Streptomyces violaceusniger Tu 4113

10,657,107

6

    

1

   

Streptosporangium

Streptosporangium roseum DSM 43021

10,341,314

6

    

1

   

Thermobifida

Thermobifida fusca YX

3,642,249

7

 

1

      

Thermomonospora

Thermomonospora curvata DSM 43183

5,639,016

7

   

1

    

Verrucosispora

Verrucosispora maris AB-18-032

6,673,976

10

1

   

1

   
  1. Unc-unclassified, Ang-Angucyclines, Ant-Anthracyclines, Ben- Benzoisochromanequinones, Pen- Pentangular polyphenols, Tet- Tetracenomycins, Aur- Tetracyclines/aureolic acids.
  2. For each microorganism with type II PKS gene cluster, this table shows genome size, number of type II PKSs, predicted aromatic polyketide chemotype and reference.