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Table 3 Association of SNPs with disease phenotype

From: A Multilocus Sequence Typing System (MLST) reveals a high level of diversity and a genetic component to Entamoeba histolytica virulence

     

Significance of SNP distribution in Invasive amebic liver abscess, dysentery and Asymptomatic disease

Genbank#accession number

AmoebaDB ID

Non-synonomous substitution

Location in reference contig

SNP

p value

q-value

XM_647889.1&

EHI_080100

Pro361Leu

2725C/T

1

0.002**

0.032**

XM_647310.1&

EHI_065250

Ser399Asp

10296A/G

3

0.05**

0.3

10297G/A

4

  

XM_644633.2

EHI_200030

Leu60Ile

16181C/A

8

0.08

0.31

XM_646031.2

EHI_120270

Pro21Ser

7994C/T

9

0.10

0.31

XM_647889.1

EHI_008810

Leu326Ile

73463C/A

10

0.24

0.44

XM_643253.1

EHI_040810

Ala197Glu

1216C/A

11

0.31

0.46

XM_645270.1

EHI_105150

Ile282Met

27395T/G

12

0.42

0.56

XM_001913781.1

EHI_138990

Val1288Leu

30231G/T

13

0.52

0.64

XM_651449.1

EHI_042210

Pro58Leu

39051C/T

14

0.92

1.00

XM_648423.2&

EHI_016380

Tyr702His

17795T/C

15

0.97

1.00

  1. #Only loci with diversity H value over 0.25 shown.
  2. ** <0.05.
  3. &Representative SNP chosen in linked SNP data sets.
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BMC Microbiology

ISSN: 1471-2180

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