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Table 2 Richness, diversity indices and coverage estimation in individual and combined libraries

From: Comparison of oral microbiota in tumor and non-tumor tissues of patients with oral squamous cell carcinoma

 

N

T

Combined

 

(n = 10)

(n = 10)

(n = 20)

No. of clones

414

500

914

Species/phylotypes (S)

57

59

80

Singletons

16

22

21

Doubletons

9

7

13

Chao1 estimator of species richness

71.22

93.57

96.96

Chao1 standard deviation

9.34

20.56

9.69

ACE estimator of species richness

68.59

83.76

97.78

Shannon’s index for diversity (H)

3.37

3.20

3.47

Simpson’s index for diversity (1-D)

0.94

0.92

0.94

Evenness (e^H/S)

0.51

0.42

0.40

Good’s estimator of coverage (%)

96.14

95.6

97.7

  1. N–non-tumor; T–tumor; Combined–non-tumor and tumor; n–number of samples.