TY - JOUR AU - Hoyos-Orrego, S. R. -. R. O. AU - Hoyos-Posada, C. AU - Mesa-Restrepo, C. AU - Alfaro-Velásquez, M. PY - 2007 DA - 2007// TI - Características clínicas, epidemiológicas y de susceptibilidad a los antibióticos en casos de bacteriemia por Klebsiella pneumoniae en neonatos JO - Rev CES Med VL - 21 ID - Hoyos-Orrego2007 ER - TY - JOUR AU - Struve, C. AU - Krogfelt, K. A. PY - 2004 DA - 2004// TI - Pathogenic potential of environmental Klebsiella pneumoniae isolates JO - Environ Microbiol VL - 6 UR - https://doi.org/10.1111/j.1462-2920.2004.00590.x DO - 10.1111/j.1462-2920.2004.00590.x ID - Struve2004 ER - TY - JOUR AU - Podschun, R. AU - Ullmann, U. PY - 1998 DA - 1998// TI - Klebsiella spp. as nosocomial pathogens: epidemiology, taxonomy, typing methods, and pathogenicity factors JO - Clin Microbiol Rev VL - 11 ID - Podschun1998 ER - TY - JOUR AU - Yu, V. L. AU - Hansen, D. S. AU - Ko, W. C. AU - Sagnimeni, A. AU - Klugman, K. P. AU - von Gottberg, A. AU - Goossens, H. AU - Wagener, M. M. AU - Benedi, V. J. PY - 2007 DA - 2007// TI - Virulence characteristics of Klebsiella and clinical manifestations of K. pneumoniae bloodstream infections JO - Emerg Infect Dis VL - 13 UR - https://doi.org/10.3201/eid1307.070187 DO - 10.3201/eid1307.070187 ID - Yu2007 ER - TY - JOUR AU - Marschall, J. AU - Fraser, V. J. AU - Doherty, J. AU - Warren, D. K. PY - 2009 DA - 2009// TI - Between community and hospital: healthcare-associated gram-negative bacteremia among hospitalized patients JO - Infect Control Hosp Epidemiol VL - 30 UR - https://doi.org/10.1086/606165 DO - 10.1086/606165 ID - Marschall2009 ER - TY - JOUR AU - Fouts, D. E. AU - Tyler, H. L. AU - DeBoy, R. T. AU - Daugherty, S. AU - Ren, Q. AU - Badger, J. H. AU - Durkin, A. S. AU - Huot, H. AU - Shrivastava, S. AU - Kothari, S. PY - 2008 DA - 2008// TI - Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice JO - PLoS Genet VL - 4 UR - https://doi.org/10.1371/journal.pgen.1000141 DO - 10.1371/journal.pgen.1000141 ID - Fouts2008 ER - TY - JOUR AU - Balestrino, D. AU - Ghigo, J. M. AU - Charbonnel, N. AU - Haagensen, J. A. AU - Forestier, C. PY - 2008 DA - 2008// TI - The characterization of functions involved in the establishment and maturation of Klebsiella pneumoniae in vitro biofilm reveals dual roles for surface exopolysaccharides JO - Environ Microbiol VL - 10 UR - https://doi.org/10.1111/j.1462-2920.2007.01491.x DO - 10.1111/j.1462-2920.2007.01491.x ID - Balestrino2008 ER - TY - JOUR AU - Boddicker, J. D. AU - Anderson, R. A. AU - Jagnow, J. AU - Clegg, S. PY - 2006 DA - 2006// TI - Signature-tagged mutagenesis of Klebsiella pneumoniae to identify genes that influence biofilm formation on extracellular matrix material JO - Infect Immun VL - 74 UR - https://doi.org/10.1128/IAI.00129-06 DO - 10.1128/IAI.00129-06 ID - Boddicker2006 ER - TY - JOUR AU - Balestrino, D. AU - Haagensen, J. A. AU - Rich, C. AU - Forestier, C. PY - 2005 DA - 2005// TI - Characterization of type 2 quorum sensing in Klebsiella pneumoniae and relationship with biofilm formation JO - J Bacteriol VL - 187 UR - https://doi.org/10.1128/JB.187.8.2870-2880.2005 DO - 10.1128/JB.187.8.2870-2880.2005 ID - Balestrino2005 ER - TY - JOUR AU - Di Martino, P. AU - Cafferini, N. AU - Joly, B. AU - Darfeuille-Michaud, A. PY - 2003 DA - 2003// TI - Klebsiella pneumoniae type 3 pili facilitate adherence and biofilm formation on abiotic surfaces JO - Res Microbiol VL - 154 UR - https://doi.org/10.1016/S0923-2508(02)00004-9 DO - 10.1016/S0923-2508(02)00004-9 ID - Di Martino2003 ER - TY - JOUR AU - Johnson, J. G. AU - Clegg, S. PY - 2010 DA - 2010// TI - Role of MrkJ, a phosphodiesterase, in type 3 fimbrial expression and biofilm formation in Klebsiella pneumoniae JO - J Bacteriol VL - 192 UR - https://doi.org/10.1128/JB.00304-10 DO - 10.1128/JB.00304-10 ID - Johnson2010 ER - TY - JOUR AU - Langstraat, J. AU - Bohse, M. AU - Clegg, S. PY - 2001 DA - 2001// TI - Type 3 fimbrial shaft (MrkA) of Klebsiella pneumoniae, but not the fimbrial adhesin (MrkD), facilitates biofilm formation JO - Infect Immun VL - 69 UR - https://doi.org/10.1128/IAI.69.9.5805-5812.2001 DO - 10.1128/IAI.69.9.5805-5812.2001 ID - Langstraat2001 ER - TY - JOUR AU - Barends, T. R. AU - Hartmann, E. AU - Griese, J. J. AU - Beitlich, T. AU - Kirienko, N. V. AU - Ryjenkov, D. A. AU - Reinstein, J. AU - Shoeman, R. L. AU - Gomelsky, M. AU - Schlichting, I. PY - 2009 DA - 2009// TI - Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase JO - Nature VL - 459 UR - https://doi.org/10.1038/nature07966 DO - 10.1038/nature07966 ID - Barends2009 ER - TY - JOUR AU - Johnson, J. G. AU - Murphy, C. N. AU - Sippy, J. AU - Johnson, T. J. AU - Clegg, S. PY - 2011 DA - 2011// TI - Type 3 fimbriae and biofilm formation are regulated by the transcriptional regulators MrkHI in Klebsiella pneumoniae JO - J Bacteriol VL - 193 UR - https://doi.org/10.1128/JB.00286-11 DO - 10.1128/JB.00286-11 ID - Johnson2011 ER - TY - JOUR AU - Wilksch, J. J. AU - Yang, J. AU - Clements, A. AU - Gabbe, J. L. AU - Short, K. R. AU - Cao, H. AU - Cavaliere, R. AU - James, C. E. AU - Whitchurch, C. B. AU - Schembri, M. A. PY - 2011 DA - 2011// TI - MrkH, a novel c-di-GMP-dependent transcriptional activator, controls klebsiella pneumoniae biofilm formation by regulating type 3 fimbriae expression JO - PLoS Pathog VL - 7 UR - https://doi.org/10.1371/journal.ppat.1002204 DO - 10.1371/journal.ppat.1002204 ID - Wilksch2011 ER - TY - JOUR AU - Schirmer, T. AU - Jenal, U. PY - 2009 DA - 2009// TI - Structural and mechanistic determinants of c-di-GMP signalling JO - Nat Rev Microbiol VL - 7 UR - https://doi.org/10.1038/nrmicro2203 DO - 10.1038/nrmicro2203 ID - Schirmer2009 ER - TY - JOUR AU - Hengge, R. PY - 2009 DA - 2009// TI - Principles of c-di-GMP signalling in bacteria JO - Nat Rev Microbiol VL - 7 UR - https://doi.org/10.1038/nrmicro2109 DO - 10.1038/nrmicro2109 ID - Hengge2009 ER - TY - JOUR AU - Cotter, P. A. AU - Stibitz, S. PY - 2007 DA - 2007// TI - c-di-GMP-mediated regulation of virulence and biofilm formation JO - Curr Opin Microbiol VL - 10 UR - https://doi.org/10.1016/j.mib.2006.12.006 DO - 10.1016/j.mib.2006.12.006 ID - Cotter2007 ER - TY - JOUR AU - Wu, K. M. AU - Li, L. H. AU - Yan, J. J. AU - Tsao, N. AU - Liao, T. L. AU - Tsai, H. C. AU - Fung, C. P. AU - Chen, H. J. AU - Liu, Y. M. AU - Wang, J. T. PY - 2009 DA - 2009// TI - Genome sequencing and comparative analysis of Klebsiella pneumoniae NTUH-K2044, a strain causing liver abscess and meningitis JO - J Bacteriol VL - 191 UR - https://doi.org/10.1128/JB.00315-09 DO - 10.1128/JB.00315-09 ID - Wu2009 ER - TY - JOUR AU - Galperin, M. Y. PY - 2004 DA - 2004// TI - Bacterial signal transduction network in a genomic perspective JO - Environ Microbiol VL - 6 UR - https://doi.org/10.1111/j.1462-2920.2004.00633.x DO - 10.1111/j.1462-2920.2004.00633.x ID - Galperin2004 ER - TY - JOUR AU - Martoglio, B. AU - Dobberstein, B. PY - 1998 DA - 1998// TI - Signal sequences: more than just greasy peptides JO - Trends Cell Biol VL - 8 UR - https://doi.org/10.1016/S0962-8924(98)01360-9 DO - 10.1016/S0962-8924(98)01360-9 ID - Martoglio1998 ER - TY - JOUR AU - Walter, P. AU - Johnson, A. E. PY - 1994 DA - 1994// TI - Signal sequence recognition and protein targeting to the endoplasmic reticulum membrane JO - Annu Rev Cell Biol VL - 10 UR - https://doi.org/10.1146/annurev.cb.10.110194.000511 DO - 10.1146/annurev.cb.10.110194.000511 ID - Walter1994 ER - TY - JOUR AU - Galperin, M. Y. AU - Nikolskaya, A. N. AU - Koonin, E. V. PY - 2001 DA - 2001// TI - Novel domains of the prokaryotic two-component signal transduction systems JO - FEMS Microbiol Lett VL - 203 UR - https://doi.org/10.1111/j.1574-6968.2001.tb10814.x DO - 10.1111/j.1574-6968.2001.tb10814.x ID - Galperin2001 ER - TY - JOUR AU - Tamayo, R. AU - Pratt, J. T. AU - Camilli, A. PY - 2007 DA - 2007// TI - Roles of cyclic diguanylate in the regulation of bacterial pathogenesis JO - Annu Rev Microbiol VL - 61 UR - https://doi.org/10.1146/annurev.micro.61.080706.093426 DO - 10.1146/annurev.micro.61.080706.093426 ID - Tamayo2007 ER - TY - JOUR AU - Mascher, T. AU - Helmann, J. D. AU - Unden, G. PY - 2006 DA - 2006// TI - Stimulus perception in bacterial signal-transducing histidine kinases JO - Microbiol Mol Biol Rev VL - 70 UR - https://doi.org/10.1128/MMBR.00020-06 DO - 10.1128/MMBR.00020-06 ID - Mascher2006 ER - TY - JOUR AU - Ryan, R. P. AU - Fouhy, Y. AU - Lucey, J. F. AU - Dow, J. M. PY - 2006 DA - 2006// TI - Cyclic di-GMP signaling in bacteria: recent advances and new puzzles JO - J Bacteriol VL - 188 UR - https://doi.org/10.1128/JB.01079-06 DO - 10.1128/JB.01079-06 ID - Ryan2006 ER - TY - JOUR AU - Jenal, U. AU - Malone, J. PY - 2006 DA - 2006// TI - Mechanisms of cyclic-di-GMP signaling in bacteria JO - Annu Rev Genet VL - 40 UR - https://doi.org/10.1146/annurev.genet.40.110405.090423 DO - 10.1146/annurev.genet.40.110405.090423 ID - Jenal2006 ER - TY - JOUR AU - Ho, Y. S. AU - Burden, L. M. AU - Hurley, J. H. PY - 2000 DA - 2000// TI - Structure of the GAF domain, a ubiquitous signaling motif and a new class of cyclic GMP receptor JO - EMBO J VL - 19 UR - https://doi.org/10.1093/emboj/19.20.5288 DO - 10.1093/emboj/19.20.5288 ID - Ho2000 ER - TY - JOUR AU - Pappalardo, L. AU - Janausch, I. G. AU - Vijayan, V. AU - Zientz, E. AU - Junker, J. AU - Peti, W. AU - Zweckstetter, M. AU - Unden, G. AU - Griesinger, C. PY - 2003 DA - 2003// TI - The NMR structure of the sensory domain of the membranous two-component fumarate sensor (histidine protein kinase) DcuS of Escherichia coli JO - J Biol Chem VL - 278 UR - https://doi.org/10.1074/jbc.C300344200 DO - 10.1074/jbc.C300344200 ID - Pappalardo2003 ER - TY - JOUR AU - Zhulin, I. B. AU - Nikolskaya, A. N. AU - Galperin, M. Y. PY - 2003 DA - 2003// TI - Common extracellular sensory domains in transmembrane receptors for diverse signal transduction pathways in bacteria and archaea JO - J Bacteriol VL - 185 UR - https://doi.org/10.1128/JB.185.1.285-294.2003 DO - 10.1128/JB.185.1.285-294.2003 ID - Zhulin2003 ER - TY - JOUR AU - Anantharaman, V. AU - Aravind, L. PY - 2001 DA - 2001// TI - The CHASE domain: a predicted ligand-binding module in plant cytokinin receptors and other eukaryotic and bacterial receptors JO - Trends Biochem Sci VL - 26 UR - https://doi.org/10.1016/S0968-0004(01)01968-5 DO - 10.1016/S0968-0004(01)01968-5 ID - Anantharaman2001 ER - TY - JOUR AU - Gomelsky, M. AU - Klug, G. PY - 2002 DA - 2002// TI - BLUF: a novel FAD-binding domain involved in sensory transduction in microorganisms JO - Trends Biochem Sci VL - 27 UR - https://doi.org/10.1016/S0968-0004(02)02181-3 DO - 10.1016/S0968-0004(02)02181-3 ID - Gomelsky2002 ER - TY - JOUR AU - Seshasayee, A. S. AU - Fraser, G. M. AU - Luscombe, N. M. PY - 2010 DA - 2010// TI - Comparative genomics of cyclic-di-GMP signalling in bacteria: post-translational regulation and catalytic activity JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkq382 DO - 10.1093/nar/gkq382 ID - Seshasayee2010 ER - TY - JOUR AU - Newell, P. D. AU - Monds, R. D. AU - O'Toole, G. A. PY - 2009 DA - 2009// TI - LapD is a bis-(3',5')-cyclic dimeric GMP-binding protein that regulates surface attachment by Pseudomonas fluorescens Pf0-1 JO - Proc Natl Acad Sci U S A VL - 106 UR - https://doi.org/10.1073/pnas.0808933106 DO - 10.1073/pnas.0808933106 ID - Newell2009 ER - TY - JOUR AU - Christen, M. AU - Christen, B. AU - Folcher, M. AU - Schauerte, A. AU - Jenal, U. PY - 2005 DA - 2005// TI - Identification and characterization of a cyclic di-GMP-specific phosphodiesterase and its allosteric control by GTP JO - J Biol Chem VL - 280 UR - https://doi.org/10.1074/jbc.M504429200 DO - 10.1074/jbc.M504429200 ID - Christen2005 ER - TY - JOUR AU - Grant, J. R. AU - Stothard, P. PY - 2008 DA - 2008// TI - The CGView Server: a comparative genomics tool for circular genomes JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkn179 DO - 10.1093/nar/gkn179 ID - Grant2008 ER - TY - JOUR AU - Dutta, C. AU - Pan, A. PY - 2002 DA - 2002// TI - Horizontal gene transfer and bacterial diversity JO - J Biosci VL - 27 UR - https://doi.org/10.1007/BF02703681 DO - 10.1007/BF02703681 ID - Dutta2002 ER - TY - JOUR AU - Cummings, L. AU - Riley, L. AU - Black, L. AU - Souvorov, A. AU - Resenchuk, S. AU - Dondoshansky, I. AU - Tatusova, T. PY - 2002 DA - 2002// TI - Genomic BLAST: custom-defined virtual databases for complete and unfinished genomes JO - FEMS Microbiol Lett VL - 216 UR - https://doi.org/10.1111/j.1574-6968.2002.tb11426.x DO - 10.1111/j.1574-6968.2002.tb11426.x ID - Cummings2002 ER - TY - JOUR AU - Maglott, D. AU - Ostell, J. AU - Pruitt, K. D. AU - Tatusova, T. PY - 2011 DA - 2011// TI - Entrez Gene: gene-centered information at NCBI JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq1237 DO - 10.1093/nar/gkq1237 ID - Maglott2011 ER - TY - JOUR AU - Marchler-Bauer, A. AU - Lu, S. AU - Anderson, J. B. AU - Chitsaz, F. AU - Derbyshire, M. K. AU - DeWeese-Scott, C. AU - Fong, J. H. AU - Geer, L. Y. AU - Geer, R. C. AU - Gonzales, N. R. PY - 2011 DA - 2011// TI - CDD: a Conserved Domain Database for the functional annotation of proteins JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq1189 DO - 10.1093/nar/gkq1189 ID - Marchler-Bauer2011 ER - TY - JOUR AU - Zdobnov, E. M. AU - Apweiler, R. PY - 2001 DA - 2001// TI - InterProScan–an integration platform for the signature-recognition methods in InterPro JO - Bioinformatics VL - 17 UR - https://doi.org/10.1093/bioinformatics/17.9.847 DO - 10.1093/bioinformatics/17.9.847 ID - Zdobnov2001 ER - TY - JOUR AU - Finn, R. D. AU - Mistry, J. AU - Tate, J. AU - Coggill, P. AU - Heger, A. AU - Pollington, J. E. AU - Gavin, O. L. AU - Gunasekaran, P. AU - Ceric, G. AU - Forslund, K. PY - 2010 DA - 2010// TI - The Pfam protein families database JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkp985 DO - 10.1093/nar/gkp985 ID - Finn2010 ER - TY - JOUR AU - Schultz, J. AU - Milpetz, F. AU - Bork, P. AU - Ponting, C. P. PY - 1998 DA - 1998// TI - SMART, a simple modular architecture research tool: identification of signaling domains JO - Proc Natl Acad Sci U S A VL - 95 UR - https://doi.org/10.1073/pnas.95.11.5857 DO - 10.1073/pnas.95.11.5857 ID - Schultz1998 ER - TY - JOUR AU - Gomi, M. S. M. AU - Mitaku, S. PY - 2004 DA - 2004// TI - High performance system for signal peptide prediction: SOSUIsignal JO - Chem-Bio Informatics Journal VL - 4 UR - https://doi.org/10.1273/cbij.4.142 DO - 10.1273/cbij.4.142 ID - Gomi2004 ER - TY - JOUR AU - Petersen, T. N. AU - Brunak, S. AU - von Heijne, G. AU - Nielsen, H. PY - 2011 DA - 2011// TI - SignalP 4.0: discriminating signal peptides from transmembrane regions JO - Nat Methods VL - 8 UR - https://doi.org/10.1038/nmeth.1701 DO - 10.1038/nmeth.1701 ID - Petersen2011 ER - TY - JOUR AU - Edgar, R. C. PY - 2004 DA - 2004// TI - MUSCLE: a multiple sequence alignment method with reduced time and space complexity JO - BMC Bioinforma VL - 5 UR - https://doi.org/10.1186/1471-2105-5-113 DO - 10.1186/1471-2105-5-113 ID - Edgar2004 ER - TY - JOUR AU - Pearson, W. R. PY - 1996 DA - 1996// TI - Effective protein sequence comparison JO - Methods Enzymol VL - 266 UR - https://doi.org/10.1016/S0076-6879(96)66017-0 DO - 10.1016/S0076-6879(96)66017-0 ID - Pearson1996 ER - TY - JOUR AU - Tamura, K. AU - Peterson, D. AU - Peterson, N. AU - Stecher, G. AU - Nei, M. AU - Kumar, S. PY - 2011 DA - 2011// TI - MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods JO - Mol Biol Evol VL - 28 UR - https://doi.org/10.1093/molbev/msr121 DO - 10.1093/molbev/msr121 ID - Tamura2011 ER - TY - JOUR AU - Crooks, G. E. AU - Hon, G. AU - Chandonia, J. M. AU - Brenner, S. E. PY - 2004 DA - 2004// TI - WebLogo: a sequence logo generator JO - Genome Res VL - 14 UR - https://doi.org/10.1101/gr.849004 DO - 10.1101/gr.849004 ID - Crooks2004 ER -