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Table 1 Open reading frames encoded by Tn 6164

From: Analysis of a Clostridium difficile PCR ribotype 078 100 kilobase island reveals the presence of a novel transposon, Tn6164

Gene Position on Tn 6164 Module Sequence identity to Annotation Gene Position on Tn 6164 Module Sequence identity to Annotation
Orf1 650-1930 A - putative modification methylase Orf25 26793-27122 B - conserved hypothetical protein
Orf2 1915-3186 A - putative modification methylase Orf26 27189-28451 B Thermoanaerobacter sp. HK97 family phage portal protein
Orf3 3252-3962 A - hypothetical protein Orf27 28448-29128 B Thermoanaerobacter sp. Peptidase S14, ClpP
Orf4 3952-5031 A - ATPase associated with various cellular activities Orf28 29140-30339 B Thermoanaerobacter sp. HK97 family phage major capsid protein
Orf5 5047-6312 A - LlaJI restriction endonuclease Orf29 30585-30899 B Thermoanaerobacter sp. uncharacterized phage protein
Orf6 C 7557-6361 A - Protein with unknown function, contains a C-terminal CGNR Zinc finger motif Orf30 30903-31238 B Thermoanaerobacter sp. phage head-tail adaptor, putative
Orf7 8000-8494 B Thermoanaerobacter sp. ECF RNA polymerase sigma-24 factor Orf31 31252-31662 B Thermoanaerobacter sp. HK97 family phage protein
Orf8 8809-9126 B Thermoanaerobacter sp. rRNA biogenesis protein rrp5, putative Orf32 31659-32012 B Thermoanaerobacter sp. Protein of unknown function (DUF806);
Orf9 9123-10250 B Thermoanaerobacter sp. Phage associated protein Orf33 32016-32618 B Thermoanaerobacter sp. DUF3647 Phage protein (HHPred)
Orf10 10256-10816 B Thermoanaerobacter sp. phage-associated protein Orf34 33330-35786 B Thermoanaerobacter sp. Phage tape measure protein
Orf11 10813-12747 B Thermoanaerobacter sp. DNA-directed DNA polymerase Orf35 35800-36573 B Thermoanaerobacter sp. phage putative tail component
Orf12 12795-13625 B Thermoanaerobacter sp. Prophage antirepressor Orf36 36692-39100 B Thermoanaerobacter sp. phage minor structural protein
Orf13 13629-14048 B Thermoanaerobacter sp. DUF 4406 (HHPred) Orf37 39320-39901 B Thermoanaerobacter sp. Putative Sipho Phage tail protein (HHPred)
Orf14 14045-16390 B Thermoanaerobacter sp. virulence-associated E protein Orf38 39928-42369 B Thermoanaerobacter sp. glycosyl hydrolase-like protein
Orf15 16910-18259 B Thermoanaerobacter sp. SNF2-related protein Orf39 42430-42855 B Thermoanaerobacter sp. toxin secretion/phage lysis holin
Orf16 18264-18722 B Thermoanaerobacter sp. phage-associated protein Orf40 42855-43556 B Thermoanaerobacter sp. N-acetylmuramoyl-L-alanine amidase
Orf17 18842-19201 B Thermoanaerobacter sp. HNH endonuclease Orf41 43975-45540 B Thermoanaerobacter sp. phage integrase family site-specific recombinase/resolvase
Orf18 19314-19865 B Thermoanaerobacter sp. Phage terminase, small subunit Orf42 45541-45954 B Thermoanaerobacter sp. recombinase/integrase
Orf19 19883-21058 B Thermoanaerobacter sp. S-adenosylmethionine synthetase Orf43 46222-47529 B Thermoanaerobacter sp. phage integrase family site-specific recombinase
Orf20 21039-22283 B Thermoanaerobacter sp. DNA methylase N-4/N-6 domain-containing protein Orf44 47987-48856 C E. faecalis pEF418 Nucleotidyl transferase
Orf21 22384-23076 B Thermoanaerobacter sp. hypothetical/virulence-related protein Orf45 48837-49571 C E. faecalis pEF418 methyltransferase
Orf22 23445-24344 B Thermoanaerobacter sp. Putative amidoligase enzyme Orf46 49604-50467 C E. faecalis pEF418 putative aminoglycoside 6-adenylyltansferase
Orf23 24382-24843 B Thermoanaerobacter sp. AIG2/GGCT-like protein Orf47 50511-51038 C E. faecalis pEF418 putative adenine phosphoribosyltransferase
Orf24 25462-26685 B Thermoanaerobacter sp. phage terminase Orf48 51251-51979 C E. faecalis pEF418 putative spectinomycin/streptomycin adenyltransferase
Orf49 52403-53176 E S. pneumoniae phage protein/replication initiator Orf71 77648-79216 E S. pneumoniae putative surface protein
Orf50 53176-54000 E S. pneumoniae DNA replication protein Orf72 79231-80088 E S. pneumoniae putative bacteriocin
Orf51 53993-54478 E S. pneumoniae DUF 3801 Orf73 80162-80773 E S. pneumoniae Predicted transcriptional regulator
Orf52 54475-55209 E S. pneumoniae phage antirepressor protein Orf74 80766-81749 E S. pneumoniae Protein with unknown function
Orf53 55202-56890 E S. pneumoniae TraG/TraD family protein Orf75 82268-82621 E S. pneumoniae transcriptional regulator, ArsR family
Orf54 57454-58486 E - DUF 318 Predicted Permease (HHPred) Orf76 82696-83940 E S. pneumoniae major facilitator superfamily MFS_1
Orf55 59048-59398 D C. fetus glyoxalase family protein Orf77 83927-84403 E S. pneumoniae toxin-antitoxin system, toxin component, GNAT domain protein
Orf56 59411-59938 D C. fetus transcriptional regulator Orf78 84758-86491 E S. pneumoniae DNA topoisomerase III
Orf57 59988-61910 D C. fetus tetracycline resistance protein Orf79 86484-87449 E S. pneumoniae possible DNA (cytosine-5-)-methyltransferase
Orf58 62225-63082 D C. fetus aminoglycoside 6-adenylyltransferase (AAD(6) Orf80 87436-95079 E S. pneumoniae superfamily II DNA and RNA helicase
Orf59 63575-64348 E S. pneumoniae replication initiator/phage Orf81 95123-95779 E S. pneumoniae putative single-stranded DNA binding protein
Orf60 64345-65172 E S. pneumoniae replicative DNA helicase Orf82 95939-96841 E S. pneumoniae transcriptional regulator, XRE family
Orf61 65314-65814 E S. pneumoniae TnpX site-specific recombinase family protein Orf83 97071-98282 E S. pneumoniae transporter, major facilitator family/multidrug resistance protein 2
Orf62 65938-66399 E S. pneumoniae flavodoxin Orf84 C 99739-98462 E S. pneumoniae relaxase/type IV secretory pathway protein VirD2
Orf63 66817-67302 E S. pneumoniae putative conjugative transposon protein Orf85 C 101169-99795 E S. pneumoniae conjugal transfer relaxosome component TraJ
Orf64 67299-68033 E S. pneumoniae phage antirepressor protein Orf86 C 101403-100321 E S. pneumoniae toxin-antitoxin system, toxin component, Fic family
Orf65 68026-69816 E S. pneumoniae TraG/TraD family protein/putative conjugal transfer protein Orf87 C 101878-101396 E S. pneumoniae putative membrane protein
Orf66 70395-70706 E S. pneumoniae putative single-strand binding protein Orf88 C 102435-101887 E S. pneumoniae putative toxin-antitoxin system, toxin component
Orf67 70934-71797 E S. pneumoniae conjugative transposon membrane protein Orf89 C 102845-102444 E S. pneumoniae regulator/toxin-antitoxin system, antitoxin component
Orf68 72099-72509 E S. pneumoniae conjugative transposon membrane protein Orf90 103034-103555 E S. pneumoniae conserved hypothetical protein
Orf69 72580-74823 E S. pneumoniae type IV conjugative transfer system protein Orf91 103825-104235 E S. pneumoniae sigma-70, region 4
Orf70 74831-77410 E S. pneumoniae conjugative transposon cell wall hydrolase/NlpC/P60 family Orf92 104966-106712 E S. pneumoniae site-specific recombinase, resolvase family