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Table 1 Open reading frames encoded by Tn 6164

From: Analysis of a Clostridium difficile PCR ribotype 078 100 kilobase island reveals the presence of a novel transposon, Tn6164

Gene

Position on Tn 6164

Module

Sequence identity to

Annotation

Gene

Position on Tn 6164

Module

Sequence identity to

Annotation

Orf1

650-1930

A

-

putative modification methylase

Orf25

26793-27122

B

-

conserved hypothetical protein

Orf2

1915-3186

A

-

putative modification methylase

Orf26

27189-28451

B

Thermoanaerobacter sp.

HK97 family phage portal protein

Orf3

3252-3962

A

-

hypothetical protein

Orf27

28448-29128

B

Thermoanaerobacter sp.

Peptidase S14, ClpP

Orf4

3952-5031

A

-

ATPase associated with various cellular activities

Orf28

29140-30339

B

Thermoanaerobacter sp.

HK97 family phage major capsid protein

Orf5

5047-6312

A

-

LlaJI restriction endonuclease

Orf29

30585-30899

B

Thermoanaerobacter sp.

uncharacterized phage protein

Orf6

C 7557-6361

A

-

Protein with unknown function, contains a C-terminal CGNR Zinc finger motif

Orf30

30903-31238

B

Thermoanaerobacter sp.

phage head-tail adaptor, putative

Orf7

8000-8494

B

Thermoanaerobacter sp.

ECF RNA polymerase sigma-24 factor

Orf31

31252-31662

B

Thermoanaerobacter sp.

HK97 family phage protein

Orf8

8809-9126

B

Thermoanaerobacter sp.

rRNA biogenesis protein rrp5, putative

Orf32

31659-32012

B

Thermoanaerobacter sp.

Protein of unknown function (DUF806);

Orf9

9123-10250

B

Thermoanaerobacter sp.

Phage associated protein

Orf33

32016-32618

B

Thermoanaerobacter sp.

DUF3647 Phage protein (HHPred)

Orf10

10256-10816

B

Thermoanaerobacter sp.

phage-associated protein

Orf34

33330-35786

B

Thermoanaerobacter sp.

Phage tape measure protein

Orf11

10813-12747

B

Thermoanaerobacter sp.

DNA-directed DNA polymerase

Orf35

35800-36573

B

Thermoanaerobacter sp.

phage putative tail component

Orf12

12795-13625

B

Thermoanaerobacter sp.

Prophage antirepressor

Orf36

36692-39100

B

Thermoanaerobacter sp.

phage minor structural protein

Orf13

13629-14048

B

Thermoanaerobacter sp.

DUF 4406 (HHPred)

Orf37

39320-39901

B

Thermoanaerobacter sp.

Putative Sipho Phage tail protein (HHPred)

Orf14

14045-16390

B

Thermoanaerobacter sp.

virulence-associated E protein

Orf38

39928-42369

B

Thermoanaerobacter sp.

glycosyl hydrolase-like protein

Orf15

16910-18259

B

Thermoanaerobacter sp.

SNF2-related protein

Orf39

42430-42855

B

Thermoanaerobacter sp.

toxin secretion/phage lysis holin

Orf16

18264-18722

B

Thermoanaerobacter sp.

phage-associated protein

Orf40

42855-43556

B

Thermoanaerobacter sp.

N-acetylmuramoyl-L-alanine amidase

Orf17

18842-19201

B

Thermoanaerobacter sp.

HNH endonuclease

Orf41

43975-45540

B

Thermoanaerobacter sp.

phage integrase family site-specific recombinase/resolvase

Orf18

19314-19865

B

Thermoanaerobacter sp.

Phage terminase, small subunit

Orf42

45541-45954

B

Thermoanaerobacter sp.

recombinase/integrase

Orf19

19883-21058

B

Thermoanaerobacter sp.

S-adenosylmethionine synthetase

Orf43

46222-47529

B

Thermoanaerobacter sp.

phage integrase family site-specific recombinase

Orf20

21039-22283

B

Thermoanaerobacter sp.

DNA methylase N-4/N-6 domain-containing protein

Orf44

47987-48856

C

E. faecalis pEF418

Nucleotidyl transferase

Orf21

22384-23076

B

Thermoanaerobacter sp.

hypothetical/virulence-related protein

Orf45

48837-49571

C

E. faecalis pEF418

methyltransferase

Orf22

23445-24344

B

Thermoanaerobacter sp.

Putative amidoligase enzyme

Orf46

49604-50467

C

E. faecalis pEF418

putative aminoglycoside 6-adenylyltansferase

Orf23

24382-24843

B

Thermoanaerobacter sp.

AIG2/GGCT-like protein

Orf47

50511-51038

C

E. faecalis pEF418

putative adenine phosphoribosyltransferase

Orf24

25462-26685

B

Thermoanaerobacter sp.

phage terminase

Orf48

51251-51979

C

E. faecalis pEF418

putative spectinomycin/streptomycin adenyltransferase

Orf49

52403-53176

E

S. pneumoniae

phage protein/replication initiator

Orf71

77648-79216

E

S. pneumoniae

putative surface protein

Orf50

53176-54000

E

S. pneumoniae

DNA replication protein

Orf72

79231-80088

E

S. pneumoniae

putative bacteriocin

Orf51

53993-54478

E

S. pneumoniae

DUF 3801

Orf73

80162-80773

E

S. pneumoniae

Predicted transcriptional regulator

Orf52

54475-55209

E

S. pneumoniae

phage antirepressor protein

Orf74

80766-81749

E

S. pneumoniae

Protein with unknown function

Orf53

55202-56890

E

S. pneumoniae

TraG/TraD family protein

Orf75

82268-82621

E

S. pneumoniae

transcriptional regulator, ArsR family

Orf54

57454-58486

E

-

DUF 318 Predicted Permease (HHPred)

Orf76

82696-83940

E

S. pneumoniae

major facilitator superfamily MFS_1

Orf55

59048-59398

D

C. fetus

glyoxalase family protein

Orf77

83927-84403

E

S. pneumoniae

toxin-antitoxin system, toxin component, GNAT domain protein

Orf56

59411-59938

D

C. fetus

transcriptional regulator

Orf78

84758-86491

E

S. pneumoniae

DNA topoisomerase III

Orf57

59988-61910

D

C. fetus

tetracycline resistance protein

Orf79

86484-87449

E

S. pneumoniae

possible DNA (cytosine-5-)-methyltransferase

Orf58

62225-63082

D

C. fetus

aminoglycoside 6-adenylyltransferase (AAD(6)

Orf80

87436-95079

E

S. pneumoniae

superfamily II DNA and RNA helicase

Orf59

63575-64348

E

S. pneumoniae

replication initiator/phage

Orf81

95123-95779

E

S. pneumoniae

putative single-stranded DNA binding protein

Orf60

64345-65172

E

S. pneumoniae

replicative DNA helicase

Orf82

95939-96841

E

S. pneumoniae

transcriptional regulator, XRE family

Orf61

65314-65814

E

S. pneumoniae

TnpX site-specific recombinase family protein

Orf83

97071-98282

E

S. pneumoniae

transporter, major facilitator family/multidrug resistance protein 2

Orf62

65938-66399

E

S. pneumoniae

flavodoxin

Orf84

C 99739-98462

E

S. pneumoniae

relaxase/type IV secretory pathway protein VirD2

Orf63

66817-67302

E

S. pneumoniae

putative conjugative transposon protein

Orf85

C 101169-99795

E

S. pneumoniae

conjugal transfer relaxosome component TraJ

Orf64

67299-68033

E

S. pneumoniae

phage antirepressor protein

Orf86

C 101403-100321

E

S. pneumoniae

toxin-antitoxin system, toxin component, Fic family

Orf65

68026-69816

E

S. pneumoniae

TraG/TraD family protein/putative conjugal transfer protein

Orf87

C 101878-101396

E

S. pneumoniae

putative membrane protein

Orf66

70395-70706

E

S. pneumoniae

putative single-strand binding protein

Orf88

C 102435-101887

E

S. pneumoniae

putative toxin-antitoxin system, toxin component

Orf67

70934-71797

E

S. pneumoniae

conjugative transposon membrane protein

Orf89

C 102845-102444

E

S. pneumoniae

regulator/toxin-antitoxin system, antitoxin component

Orf68

72099-72509

E

S. pneumoniae

conjugative transposon membrane protein

Orf90

103034-103555

E

S. pneumoniae

conserved hypothetical protein

Orf69

72580-74823

E

S. pneumoniae

type IV conjugative transfer system protein

Orf91

103825-104235

E

S. pneumoniae

sigma-70, region 4

Orf70

74831-77410

E

S. pneumoniae

conjugative transposon cell wall hydrolase/NlpC/P60 family

Orf92

104966-106712

E

S. pneumoniae

site-specific recombinase, resolvase family