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Table 3 Primers used for the amplification and sequencing of P. verrucosa

From: Occurrence and characteristics of group 1 introns found at three different positions within the 28S ribosomal RNA gene of the dematiaceous Phialophora verrucosa: phylogenetic and secondary structural implications

Primer

Sequence (5'-3')

5' position*

Source

5' position including ITS

ITS1

TCCGTAGGTGAACCTGCGG

-563

White TJ, et al. [48]

1

ITS3

GCATCGATGAAGAACGCAGC

-309

White TJ, et al. [48]

255

NL1

GCATATCAATAAGCGGAGGAAA

39

O'Donnell K [49]

603

3PV26

CCGTCTTGAAACACGGACC

633

This work

1197

inFG-F

CCGAAAGATGGTGAACTATGCC

795

This work

1359

inF-F

ACGTGCAAATCGATCGTCAA

868

This work

1432

inF-R

CAAGGCCTCTAATCATTCGCT

1009

This work

1573

8PV26

GAACCTTTCCCCACTTCAG

1487

This work

2051

11PV26

AAGCCATAGGGAAGTTCCGT

1525

This work

2089

9PV26

GTCGTACTCATAACCGCAG

1818

This work

2382

CA-INT-L

ATAAGGGAAGTCGGCAAAATAGATCCGTAA

1881

McCullough MJ, et al. [50]

2445

2PV26

TCCCGAAGTTACGGATCTA

1918

This work

2482

16PV26

CCCAACCCTTAGAGCCAATC

1942

This work

2506

10PV26

CCGTACCAGTTCTAAGTTG

2089

This work

2653

inG-F

GATGGCCAGAAAGTGGTGTTG

2130

This work

2694

inG-R

TAGGGACAGTGGGAATCTCGT

2314

This work

2878

26S-INT3

CTAGCGAAACCACAGCCAAG

2323

This work

2887

CA-INT-R

CCTTGGCTGTGGTTTCGCTAGATAGTAGAT

2343

McCullough MJ, et al. [50]

2907

inFG-R

GCTCTCCCACCTATTCTACACC

2445

This work

3009

12PV26

TGGTATTTCACCGGCGATTG

2464

This work

3028

IGS1-M-R

CTGCCACAAGCCAGTTATC

2805

This work

3369

IGS3-M

CTTCGATGTCGGCTCTTCCT

2838

This work

3402

IGS-L

TAGTACGAGAGGAACCGT

2991

Williamson ECM et al. [51]

3555

3IGS-PV

TCTAAGTCAGAATCCGTGCCG

3090

This work

3654

5IGS1-PV

ACGAGCTACTGAGCGTAAG

3318

This work

3882

6IGS-PV

GACCACAGTCAGGCTTACG

3349

This work

3913

L2563 F

CACAGGGATAACTGGCTTGTGG

2781

This work

3345

L2563R

ATCTGAATCAACGGTTCCTCTCG

3018

This work

3582

  1. * The 5' position is relative to the 28S rDNA sequence of the P. verrucosa Yao strain.