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Table 3 Characterization of MSSA isolates from Nigeria by antibiotic susceptibility pattern, detection of antibiotic and virulence genes, spa typing and MLST

From: Antibiotic resistance and molecular epidemiology of Staphylococcus aureusin Nigeria

Isolate No Location Sample Or Clinical Diagnosis Antibiotype Antibiotic resistance genes Toxin genes spatype MLST Clonal Complex (CC)
09-01760 Ife Wound Infection PEN, CIP, SXT - lukPV, seh t127   CC1
09-01823 Ife Wound Infection PEN, OTE tetK lukPV, seh t127   
09-01785-1 Ibadan Conjunctivitis PEN - lukPV, seh t114   
09-01787 Maiduguri Wound Infection PEN, OTE tetK seh t321 1  
09-01733 Ife Otitis media PEN, SXT - lukPV t311   CC5
09-01738 Lagos Urinary tract infection PEN, ERY, OTE, CIP, SXT tetM, mrsA - t311 5  
09-01777 Ibadan Wound Infection PEN, CIP - - t311   
09-01815 Maiduguri Otitis media PEN, ERY, OTE, SXT tetM, mrsA - t311   
09-01737 Lagos Semen (Infertility) PEN, GEN, OTE, SXT aacA-aphD, tetK - t951   CC8
09-01742 Lagos Unknown PEN, OTE tetK - t1617 8  
09-01780 Ibadan Conjunctivitis PEN, SXT - - t064   
09-01796 Maiduguri Sputum (Unknown) PEN, OTE, SXT tetK - t064   
09-01810 Ife Sputum (Unknown) PEN, OTE, CIP, SXT tetK - t1496   
09-01817-1 Maiduguri Urinary tract infection PEN, OTE, SXT tetK - t1496   
09-01819 Maiduguri Semen (Infertility) PEN, OTE, SXT tetK - t2812   
09-01822 Ife Sputum (Unknown) PEN, OTE, SXT tetK - t1496   
09-01734 Ife Unknown PEN, OTE, SXT tetK - t084   CC15
09-01736 Lagos Otitis media OTE tetM - t084   
09-01750 Ife Nasal* PEN, SXT - lukPV t084   
09-01751 Ife Nasal* PEN, SXT - lukPV t084 15-slv  
09-01752 Ife Nasal* SXT - lukPV t084   
09-01755 Ife Nasal* PEN, OTE, SXT tetK - t084   
09-01756 Ife Nasal* PEN, OTE, CIP, SXT tetK - t084   
09-01799 Maiduguri Otitis media PEN, OTE, SXT tetK - t084   
09-01801 Maiduguri Otitis media PEN, OTE, SXT tetK - t084   
09-01805 Ife Blood Infection OTE tetM - t084 15-slv  
09-01820 Ife Wound Infection PEN, SXT - - t084   
09-01821 Ife Wound Infection PEN, OTE, SXT tetK - t084   
09-01824 Ife Wound Infection CIP, SXT - - t084   
09-01788 Maiduguri Wound Infection PEN, OTE, SXT tetK - t2216   
09-01798 Maiduguri Semen (Infertility) PEN, OTE, SXT tetK - t2216 15  
09-01804 Maiduguri Wound Infection PEN, OTE, SXT tetK - t2216   
09-01806 Ife Unknown PEN, SXT - - t328   
09-01813 Ife Wound Infection PEN, SXT - - t5387   
09-01740 Lagos Wound Infection PEN, CIP, SXT - lukPV t318   CC30
09-01743 Lagos Wound Infection CIP, SXT - lukPV t318 30  
09-01747-2 Lagos Wound Infection Susceptible to all antibiotics - lukPV t318 30  
09-01779 Ibadan Wound Infection PEN, CIP, SXT - lukPV t021   
09-01825 Ife Otitis media PEN, CIP - - t631   
09-01732 Ile-Ife Unknown PEN, SXT - lukPV t159   CC121
09-01759 Ile-Ife Wound Infection PEN, SXT - lukPV t314   
09-01797 Maiduguri Wound Infection OTE tetK lukPV t314   
09-01826 Ile-Ife Otitis media PEN - lukPV t159 121  
09-01745 Lagos Semen (Infertility) PEN, SXT - lukPV t2304 121  
09-01781 Ibadan Wound Infection PEN, OTE, SXT tetK lukPV t2304   
09-01761 Ife Wound Infection PEN - lukPV t355   singleton
09-01762 Ife Wound Infection PEN - lukPV t355   
09-01778 Ibadan Wound Infection PEN, CIP - lukPV t355   
09-01790 Maiduguri Wound Infection Susceptible to all antibiotics - - t355 152  
09-01793 Maiduguri Wound Infection PEN - lukPV t355   
09-01803 Maiduguri Wound Infection PEN, OTE, SXT tetK lukPV t355   
09-01753 Ife Nasal* PEN, SXT - etd t3772 25 singleton
09-01754 Ife Nasal* PEN, SXT - etd t3772   
09-01757 Ife Nasal* PEN, SXT - etd t3772   
09-01802 Maiduguri Wound Infection PEN, CIP - - t939 45 CC45
09-01792 Maiduguri Wound Infection PEN, OTE tetK - t458 97 CC97
09-01800 Maiduguri Wound Infection PEN, OTE, SXT tetK lukPV, etd t934 80 CC80
  1. aClonal complex (CC) inferred from MLST and spa typing
  2. *Nasal isolates from apparently healthy male students
  3. slv: single locus variant
  4. Geographical region: South-West Nigeria (Ile-Ife, Ibadan and Lagos)
  5. North-East Nigeria (Maiduguri)