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Table 4 The consensus tags from the 16S rRNA gene library.

From: Community analysis of bacteria colonizing intestinal tissue of neonates with necrotizing enterocolitis

Genus/family

class

typestrain

Sequence

Corynebacterium

Actinobacteria

10-27

CTTAACGCAGCAAGTCGAACGGAAAGGCCCAAGCTTGCTTGGGTACTCGAGT

Acidimicrobium

Actinobacteria

7-54

CTTAACGCAGCAAGTCGGCAAGCGGGTGCGTAACACG

Actinomycetales

Actinobacteria

C50

AACGATGAAGCCCAGCTTGCTGGGTGGATTAGTGGCGAAC

Bifidobacterium

Actinobacteria

C35

AACGGGATCCCAGGAGCTTGCTCCTGGGTGAGAGTGGCGAAC

Clavibacter

Actinobacteria

9-66

AATGCATGCAAGTCGAACGGTGATGTCAGAGCTTGCTCTGGCGGATCAGTGGCGAAC

Corynebacterineae

Actinobacteria

B33

AACGGAAAGGCCCTGCTTGCAGGGTGCTCGAGTGGCGAAC

Micrococcineae

Actinobacteria

B54

AACGATGAAGCCCAGCTTGCTGGGCGGATTAGTGGCGAAC

Propionibacterium

Actinobacteria

9-22

AACGGAAAGGCCCTGCTTTTGTGGGGTGCTCGAGTGGCGAAC

Bradyrhizobium

α-proteobacteria

7-95

GCAAGTCGAGCGGGCATAGCAATATGTCAGCGGCAGAC

Caulobacter

α-proteobacteria

5-10

AACGGATCCTTCGGGATTAGTGGCGGACGGGTGCGTAACACGTGG

Rhodobacteriaceae

α-proteobacteria

9-24

AGCGAGGACTTCGGTTCTAGCGGCGGACGGGTGCGTAACACGTGAA

Sphingomonadaceae

α-proteobacteria

A48

CCTAACGCAGCAAGTCGAACGAACTCTTCGGAGTTAGTGGCGGAC

Bacillales

Bacilli

10-49

AATGCATGCAAGTCGAGCGGAGTTGACGAGAAGCTTGCTTCTCGGATGCTTAGCGGCGGA

Enterococcus

Bacilli

A45

AACGCTTCTTTTTCCACCGGAGCTTGCTCCACCGGAAAAGAGGAG

Exiguobacterium

Bacilli

9-61

AGCGCAGGAAGCCGTCTGAACCCTTCGGGGGGACGACGGTGGAATGA

Lactobacillus

Bacilli

6-3

CCTAATGCATGCAAGTCGAGCGAGCGGAACCAACAGATTTACTTCGGTAATGACGTT

Staphylococcus

Bacilli

B55

AGCGAACAGACAAGGAGCTTGCTCCTTTGACGTTAGCGGCGGAC

Bacteroidales

Bacteroidetes/Chlorobi group

5-73

CTTAATACATGCAAGTCGAGGGGCAGCATGGTCTTAGCTTGCTAAGGCTGATGGCGACCG

Porphyromonas

Bacteroidetes/Chlorobi group

7-33

CTTAACACATGCAAGTCGAGGGGCAGCATTATTTTAGCTTGCTAAGATAGAT

Prevotella

Bacteroidetes/Chlorobi group

7-66

TCCTAACGCATGCAAGTCGAGGGGCAGCATGGAAGAAGCTTGCTTCTTCTGATGGCGA

Burkholderiales

β-proteobacteria

9-31

AACGGTAACAGGTCTTCGGACGCTGACGAGTGGCGA

Cupriavidus

β-proteobacteria

A70

AACGGCAGCGCGGGCTTCGGCCTGGCGGCGAGTGGCGA

Ralstonia

β-proteobacteria

5-36

AACGGCAGCATGATCTAGCTTGCTAGATTGATGGCGAGTGGCGA

zoogloea

β-proteobacteria

10-86

AACGGTAACAGGGAGCTTGCTCCGCTGACGAGTGGCGA

Anaerococcus

Clostridia

6-29

AACGATGAAACTTAATTGATTTCTTCGGAATGATTTTAAGTGGATTAGTGGCGG

Clostridium

Clostridia

C1

AGCGATGAAGCTCCTTCGGGAGTGGATTAGCGGCGGAC

Dialister

Clostridia

A7

AACGGGAAGAGATGAAGAGCTTGCTCTTTATCGAATCCAGTGGCAAAC

Faecalibacterium

Clostridia

C42

AACGGAGTTGAGAGGAGCTTGCTTTTCTTGACTTAG

Finegoldia

Clostridia

10-63

AACGGGATTTAGTAGACAGAAACCTCGGTGGAAGATTACTAATGAGAGTGGCGAACGGGT

Lachnospiraceae

Clostridia

A96

AACGAAGCGATTAAGAGGAAGTTTTCGGATGGAATCTTAATTGACTGA

Papillibacter

Clostridia

C16

AACGGAGCACCTTGAAAGAGACTTCGGTCAATGGATGAGACTGCTT

Peptoniphilus

Clostridia

7-94

AGCGATGAAATTTTGACAGATCCCTTCGGGGTGAAGATAAAATGGATTAGCGGCGGA

Ruminococcaceae

Clostridia

9-81

AACGGAGTTAATTTTGTTGAAGTTTTCGGATGGATACGAAGTTAACTTAGTGGCGA

Veillonella

Clostridia

9-73

AACGGACAGATAGAGAGCTTGCTCTCTTGAAGTTAGTGGCGAAC

Cystobacteraceae

Δ-proteobacteria

7-10

AACGCAGCAAGTCGGGTGCGTAACACGTGGG

Acinetobacter

γ-proteobacteria

9-10

AACGCAGCAAGTCGAGCGGAGATGAGGTGCTTGCACCTTATCTTAGCGGCGGAC

Enhydrobacter

γ-proteobacteria

A49

AACGATGATTATCTAGCTTGCTAGATATGATT

Enterobacteriaceae

γ-proteobacteria

C5

AACGGTAGCACAGAGAGCTTGCTCTCGGGTGACGAGTGGCGGAC

Pseudomonas

γ-proteobacteria

C19

AGCGGTAGAGAGAAGCTTGCTTCTCTTGAGAGCGGCGGAC

Rickettsiella

γ-proteobacteria

A22

CCTAACGCAGCAAGTCGAACGGCAGCACAGTAAAGATTTCGGTCTTTAT

Shigella/Escherichia

γ-proteobacteria

C26

AACGGTAACAGGAAACAGCTTGCTGATTTGCTGACGAGTGGCGGAC

  1. The individual tags (N = 364) were assigned to the closest mono-phylogenetic group.