Table 3 BLAST identifications of the excised DGGE bands
DGGE amplicon | Identification | Sequence | # Bp | ||||
|---|---|---|---|---|---|---|---|
Band nr | Primer | # Bp | Species | Accession Nr | % identity | Identical | Total |
54.2 | L1401-R (V6-V8) | 397 | Uncultured bacterium | EF405354.1 | 98 | 385 | 389 |
| Â | Â | Â | Eubacterium contortum | L34615.1 | 93 | 364 | 390 |
| Â | Â | Â | Clostridium oroticum | M59109.1 | 94 | 367 | 389 |
| Â | Â | Â | Ruminococcus torques | L76604.1 | 93 | 365 | 389 |
60.1 | 518R (V3) | 139 | Uncultured bacterium | EF403112.1 | 100 | 124 | 124 |
| Â | Â | Â | Ruminococcus productus | AY937379.1 | 98 | 122 | 124 |
| Â | Â | Â | Clostridium sp. | Y10584.1 | 98 | 122 | 124 |
| Â | Â | Â | Ruminococcus hansenii | M59114.1 | 97 | 121 | 124 |
45.9 | Bfra 531F | 241 | Bacteroides fragilis | DQ100447.1 | 99 | 210 | 211 |
| Â | Â | Â | Bacteroides finegoldii | AB222700.1 | 98 | 207 | 211 |
| Â | Â | Â | Bacteroides thetaiotaomicron | AY319392.1 | 97 | 206 | 211 |