Skip to main content

Advertisement

Table 3 BLAST identifications of the excised DGGE bands

From: Denaturing gradient gel electrophoresis of neonatal intestinal microbiota in relation to the development of asthma

DGGE amplicon Identification Sequence # Bp
Band nr Primer # Bp Species Accession Nr % identity Identical Total
54.2 L1401-R (V6-V8) 397 Uncultured bacterium EF405354.1 98 385 389
    Eubacterium contortum L34615.1 93 364 390
    Clostridium oroticum M59109.1 94 367 389
    Ruminococcus torques L76604.1 93 365 389
60.1 518R (V3) 139 Uncultured bacterium EF403112.1 100 124 124
    Ruminococcus productus AY937379.1 98 122 124
    Clostridium sp. Y10584.1 98 122 124
    Ruminococcus hansenii M59114.1 97 121 124
45.9 Bfra 531F 241 Bacteroides fragilis DQ100447.1 99 210 211
    Bacteroides finegoldii AB222700.1 98 207 211
    Bacteroides thetaiotaomicron AY319392.1 97 206 211