From: Fnr (EtrA) acts as a fine-tuning regulator of anaerobic metabolism in Shewanella oneidensisMR-1
Gene ID | Gene name | Relative expressiona | Predicted EtrA binding sitesc | COG Annotation |
---|---|---|---|---|
SO0162 | pckA | 2.21 (± 0.48)b | TGTGAGCTGGATCATT | phosphoenolpyruvate carboxykinase (ATP) |
SO0747 | fpr | 2.17 (± 1.01) | ferredoxin--NADP reductase | |
SO1103 | nqrA-2 | 2.25 (± 0.54) | TCTGCGCTAGCTCAAT CGTGATTGCGATCGCA | NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit |
SO1104 | nqrB-2 | 2.70 (± 1.01) | ↓ | NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB |
SO1105 | nqrC-2 | 3.15 (± .080) | ↓ | NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit |
SO1106 | nqrD-2 | 4.65 (± 2.07) | ↓ | NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD |
SO1107 | nqrE-2 | 3.63 (± 1.61) | ↓ | NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrE |
SO1108 | nqrF-2 | 4.21 (± 2.05) | ↓ | NADH:ubiquinone oxidoreductase, Na translocating, beta subunit |
SO1891 | scoB | 3.77 (± 1.80) | Acetyl-CoA:acetoacetate CoA transferase, alpha subunit AtoA | |
SO1892 | scoA | 3.21 (± 2.14) | acetate CoA-transferase, beta subunit AtoD | |
SO1927 | sdhC | 2.47 (± 1.26) | succinate dehydrogenase, cytochrome b556 subunit | |
SO1930 | sucA | 3.02 (± 1.22) | 2-oxoglutarate dehydrogenase, E1 component | |
SO1931 | sucB | 3.60 (± 1.58) | 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase | |
SO1932 | sucC | 3.29 (± 0.98) | succinyl-CoA synthase, beta subunit | |
SO1933 | sucD | 3.28 (± 1.24) | succinyl-CoA synthase, alpha subunit | |
SO2361 | ccoP | 2.30 (± 0.92) | ↑ | cytochrome c oxidase, cbb3-type, subunit III |
SO2362 | ccoQ | 3.44 (± 1.16) | ↑ | cytochrome c oxidase, cbb3-type, CcoQ subunit |
SO2364 | ccoN | 2.76 (± 1.07) | CTTGAGCCATGTCAAA GTTGATCTAGATCAAT | cytochrome c oxidase, cbb3-type, subunit I |
SO4509 | fdhA-1 | 2.33 (± 0.56) | formate dehydrogenase, alpha subunit | |
SO4510 | fdhB-1 | 4.03 (± 1.57) | formate dehydrogenase, iron-sulfur subunit | |
SO4511 | fdhC-1 | 2.53 (± 0.31) | formate dehydrogenase, C subunit, putative |