Targeta | Primer/Adaptor | Sequence (5' to 3') | Size (bp) | Reference |
---|---|---|---|---|
-- | Bgl II adaptor1 | CGGACTAGAGTACACTGTC | -- | [38] |
-- | Bgl II adaptor2 | GATCGACAGTGTACTCTAGTC | -- | [38] |
-- | Csp6 I adaptor1 | AATTCCAAGAGCTCTCCAGTAC | -- | [38] |
-- | Csp6 I adaptor2 | TAGTACTGGAGAGCTCTTGG | -- | [38] |
-- | BLG2F-0 | 6-fam-GAGTACACTGTCGATCT | -- | [38] |
-- | CSP61-A | GAGCTCTCCAGTACTACA | -- | [38] |
Universal 16S rRNA gene | UNI27F | AGAGTTTGATCCTGGCTCAG | -- | [37] |
 | UNI338F | ACTCCTACGGGAGGCAG | -- | [37] |
 | UNI1100R | AGGGTTGCGCTCGTTG | -- | [37] |
 | UNI1492R | TACGG(C/T)TACCTTGTTACGACT | -- | [37] |
C. concisus 23S rRNA gene | MUC1 (forward) | ATGAGTAGCGATAATTGGG | -- | [11] |
 | CON1 (reverse) | CAGTATCGGCAATTCGCT | 306 | [11] |
 | CON2 (reverse) | GACAGTATCAAGGATTTACG | 308 | [11] |
C. concisus cpn gene (primary primers) | Ccon-cpn_66f | TATCGAAGTGAAACGTGGCA | 357 | [35] |
 | Ccon_cpn_423r | GCTCAAGCACTGGCAATAAG | -- | [35] |
C. concisus cpn gene (nested primers) | Ccon_cpn_72f | AGTGAAACGTGGCATGGATA | 270 | [35] |
 | Ccon_cpn_342r | GCATCTTTTCAGGGTTTGTG | -- | [35] |
C. concisus S-layer RTX gene (YP_001465940.1) | FCCC13826_1838 | ACAGGCCATAAGTGGATTGC | 374 | This study |
 | RCCC13826_1838 | CCGTCATAGTGGGCTCTCAT | -- | This study |
C. concisus zot gene (YP_001467422) | FCCC13826_2075 | TGCAAACCCTTTGTGATGAA | 355 | This study |
 | RCCC13826_2075 | CATGAGCCAGCTCAATCAAC | -- | This study |
Human interleukin 8 gene (NM_000584) | hIL-8f | TTTTGCCAAGGAGTGCTAAAGA | 194 | PB b |
 | hIL-8r | AACCCTCTGCACCCAGTTTTC | -- | PB b |
Human C1orf33 gene (NM_016183) | hC1orf33f | TCCAAGCGCGACAAGAAAGT | 102 | PB b |
 | hC1orf33r | GTAGGTGTCCACACATTTCCG | -- | PB b |
C. jejuni CDT B gene (U51121) | P5 | GAATCCGTTGGCACTTGGAATTTGCAAGGC | 495 | [40] |
 | P6 | GGATTCGTTAAAATCCCCTGCTATCATCCA | -- | [40] |