Figure 2

Regulation of ompC , F and X by CRP. a) Quantitative RT-PCR. The mRNA levels of each indicated gene were compared between Δcrp and WT. This figure shows the increased (positive number) or decreased (minus one) mean fold for each gene in Δcrp relative to WT. b) LacZ fusion reporter. A promoter-proximal region of each indicated gene was cloned into pRW50 containing a promotorless lacZ reporter gene, and transformed into WT or Δcrp to determine the promoter activity (β-Galactosidase activity in cellular extracts). The empty plasmid was also introduced into the corresponding strain as negative control, which gave extremely low promoter activity (data not shown). β-Galactosidase activity in each tested cellular extract was subtracted with that of negative control. This figure shows the increased (positive number) or decreased (minus one) mean fold for the detecting promoter activity in Δcrp relative to WT. c) Primer extension. Primer extension assays were performed for each indicated gene using total RNAs isolated from the exponential-phase of WT or Δcrp. An oligonucleotide primer complementary to the RNA transcript of each gene was designed from a suitable position. The primer extension products were analyzed with 8 M urea-6% acrylamide sequencing gel; lanes C, T, A, and G represent the Sanger sequencing reactions, respectively. On the right side, DNA sequences are shown from the bottom (5') to the top (3'), and the transcription start sites were underlined. d) DNase I footprinting. The labeled DNA probe was incubated with various amounts of purified His-CRP (lanes 1, 2, 3, 4, and 5 containing 0, 5, 10, 15 and 20 pmol, respectively) in the presence of 2 mM cAMP, and subjected to DNase I footprinting assay; lanes G, A, T, and C represent the Sanger sequencing reactions, respectively. The protected regions (bold lines) are indicated on the right-hand side. The numbers indicated the nucleotide positions upstream the transcriptional start sites.