Skip to main content

Table 1 Genes tested in both computational and biochemical assays

From: Phenotypic and transcriptional analysis of the osmotic regulator OmpR in Yersinia pestis

Gene ID

Gene

Regulation

Computational matching of regulatory consensus

Position of DNA fragment used §

   

Position§

Sequence

Score

LacZ

Footprinting

YPO1222

ompC

+

D-110...-91

ATAAATACTTGTTGCAATTT

7.06

-379...+130

-245...+31

YPO1411

ompF

+

R-99...-80

TTTACATTTTGTAACACATA

11.57

-328...+143

-389...+69

YPO2506

ompX

+

R-82...-63

GAAATTCTTTGTTACATGAA

6.03

-374...+123

-191...+89

YPO0136

ompR

+

D-81...-62

AATAAGCTTTGTAACAATTT

10.34

-409...+83

-238...+14

  1. §, The numbers indicate the nucleotide positions upstream of the transcription start sites
  2. +, positive and direct regulation
  3. -, negative and direct regulation