Comparative genomic analysis reveals significant enrichment of mobile genetic elements and genes encoding surface structure-proteins in hospital-associated clonal complex 2 Enterococcus faecalis

Solheim, Margrete; Brekke, Mari C; Snipen, Lars G; Willems, Rob JL; Nes, Ingolf F; Brede, Dag A

doi:10.1186/1471-2180-11-3

Table 1 Enterococcus faecalis isolates used in this study. CC; clonal complex, CGH; comparative genomic hybridization, MLST; multilocus sequence typing, S; singleton, ST; sequence type.

From: Comparative genomic analysis reveals significant enrichment of mobile genetic elements and genes encoding surface structure-proteins in hospital-associated clonal complex 2 Enterococcus faecalis

Strain	Year	Country	Source	MLST		Application	Reference
				ST	CC
TX0104		USA	Clinical	2	2	In silico	[65]
609/96	1996	Poland	Wound	6	2	CGH, PCR	[25]
372-56	2007	Norway	Blood	6	2	CGH, PCR
226B	2005	Norway	Feces	6	2	PCR	[27]
368-42	2007	Norway	Blood	6	2	PCR
442/05	2005	Poland	CSF	6	2	PCR	[25]
E1828	2001	Spain	Blood	6	2	PCR	[26]
MMH594	1985	USA	Clinical	6	2	CGH^C, PCR	[66]
V583	1989	USA	Blood	6	2	CGH, PCR	[67]
158B	2005	Norway	Feces	6	2	CGH^B, PCR	[27]
HH22	≤1982	USA	Urine	6	2	In silico	[29]
LMGT3303				6	2	CGH^D, PCR
E1834	2001	Spain	Blood	51	2	CGH, PCR	[26]
E4250	2007	Netherlands	Feces	183	2	CGH, PCR
HIP11704	2002	USA	Clinical	4	4	In silico	[68]
E1841	2001	Spain	Blood	9	9	CGH, PCR	[26]
Vet179	1999	Norway	Dog_urine	9	9	CGH^D, PCR	[69]
CH188	1980s	USA	Liver	9	9	In silico	[70]
E1807	2002	Spain	Feces	17	9	CGH, PCR	[26]
X98	1934		Feces	19	19	In silico	[71]
OG1RF	≤1975	USA	Oral	1	21	CGH^C, PCR	[72]
E1960	2001	Spain	Feces	8	21	CGH, PCR	[26]
T8	≤1992	Japan	Urine	8	21	In silico	[73]
2426/03	2003	Poland	Feces	21	21	CGH, PCR	[25]
ATCC 29200	≤1974	Canada	Urogenital	21	21	In silico	[74]
T1	≤1950			21	21	In silico	[73]
LMGT3406	1999	Denmark	Poultry_feces	22	21	CGH^D, PCR
111A	2005	Norway	Feces	161	21	CGH^B, PCR	[27]
TX1322		USA		161	21	In silico	[65]
3339/04	2004	Poland	Blood	23	25	CGH, PCR	[25]
UC11/46		Finland	Feces	97	25	CGH, PCR	[19]
189	2002-2003	Norway	Feces	162	25	CGH^B, PCR	[27]
Symbioflor 1		Germany	Feces	248	25	CGH^C, PCR	[75]
T2	≤1992	Japan	Urine	11	28	In silico	[73]
E1188	1997	Greece	Blood	28	28	CGH, PCR	[26]
383/04	2004	Poland	Blood	87	28	CGH, PCR	[25]
E1052		Netherlands	Feces	30	30	CGH^D, PCR
85	2008	Norway	Feces	30	30	CGH^B, PCR	[27]
597/96	1996	Poland	Ulcer	40	40	CGH, PCR	[25]
LMGT2333		Iceland	Fish	40	40	CGH^D, PCR
JH1	≤1974	United Kingdom	Clinical	40	40	In silico	[76]
LMGT3209		Greece	Food_cheese	40	40	CGH^D, PCR
1645	2007	Denmark	Blood	220	40	CGH, PCR
29C	2004	Norway	Feces	44	44	CGH^B, PCR	[27]
92A	2005	Norway	Feces	44	44	CGH^B	[27]
DS5	≤1974			55	55	In silico	[77]
E2370		Hungary	Wound	16	58	CGH, PCR
105	2002-2003	Norway	Feces	16	58	CGH^B, PCR	[27]
D6		Denmark	Pig	16	58	In silico	[31]
E1Sol	1960s	Solomon Islands	Feces	93	93	In silico	[78]
Merz96	2002	USA	Blood	103	103	In silico	[79]
R712		USA	Clinical	103	103	In silico	[65]
S613		USA	Clinical	103	103	In silico	[65]
LMGT3405	1999	Denmark	Poultry_feces	116	116	CGH^D, PCR
LMGT3407	1999	Denmark	Poultry_feces	34	121	CGH^D, PCR
Fly1	2005	USA	Drosophila	101	101^A	In silico	[31]
Vet138	1998	Norway	Dog_ear	164	119^A	CGH^D, PCR	[69]
82	2008	Norway	Poultry_feces	65	S	CGH^D, PCR
T11	≤1992	Japan	Urine	65	S	In silico	[73]
62	2002-2003	Norway	Feces	66	S	CGH^B, PCR	[27]
ATCC 4200	1926		Blood	105	S	In silico
AR01/DG	2001	New Zealand	Dog	108	S	In silico	[80]
266	2002-2003	Norway	Feces	163	S	CGH^B, PCR	[27]
LMGT3143		Spain	Animal_wood pigeon	165	S	CGH^D, PCR
LMGT3208		Greece	Food_cheese	166	S	CGH^D, PCR
84	2008	Norway	Poultry_feces	249	S	CGH^D, PCR
TuSoD ef11		USA	Clinical	364	S	In silico	[65]

^AClonal complexes were no predicted founder was proposed by eBURST.
^BIn Solheim et al. 2009.
^CIn Vebø et al. 2010.
^DMS, unpublished work.

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ISSN: 1471-2180

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