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Table 3 Select genes whose expression levels responded to short-term (30 min) perturbation with PEG8000 but not sodium chloride (FDR < 0.05, fold-difference > 2).

From: Transcriptome and membrane fatty acid analyses reveal different strategies for responding to permeating and non-permeating solutes in the bacterium Sphingomonas wittichii

Gene ID Gene Product PEG8000 expression fold-change Regulation type
Swit_0060 RNA polymerase factor sigma-32 3.7 up
Swit_0074 peptide methionine sulfoxide reductase 2.3 up
Swit_0390 ATP-dependent protease La 2.4 up
Swit_1250 chaperone protein DnaK 3.6 up
Swit_1939 peptidase M48, Ste24p 3.4 up
Swit_2682 thioredoxin 2.6 up
Swit_2816 methionine-R-sulfoxide reductase 2.5 up
Swit_3375 chaperonin Cpn10 9.5 up
Swit_3376 chaperonin GroEL 9.7 up
Swit_3913 peptidase M23B 2.1 up
Swit_4376 ATP-dependent protease peptidase subunit 3.3 up
Swit_4377 ATP-dependent protease ATP-binding subunit 4.1 up
Swit_4509 membrane protease FtsH catalytic subunit 2.4 up
Swit_5306 heat shock protein DnaJ domain-containing protein 2.2 up
Swit_5351 heat shock protein 90 4.0 up
Swit_2634 benzoate 1,2-dioxygenase, alpha subunit 3.2 down
Swit_3086 gentisate 1 2-dioxygenase-like protein 3.3 down
Swit_3094 glyoxalase/bleomycin resistance protein/dioxygenase 2.8 down
Swit_3864 homogentisate 1,2-dioxygenase 3.6 down
Swit_3865 4-hydroxyphenylpyruvate dioxygenase 3.4 down
Swit_4263 gentisate 1 2-dioxygenase-like protein 2.1 down