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Table 4 Comparison of Differentially Expressed Genes in Δfur That Contain a Putative Fur Binding Site with Confirmed Data of Fur Regulation from other Studies and the Possible Involvement of other Transcription Regulators

From: The Fur regulon in anaerobically grown Salmonella enterica sv. Typhimurium: identification of new Fur targets

Genes Regulated by Fur and containing a putative Fur motifa Fold Changeb Published Evidence of Fur Regulation [Ref.] Published Evidence of Fur Binding [Ref.]c Published Evidence of Control By Other Regulators [Ref]d
rlgA 2.8 No No  
map 2.6 No No  
rpsB 4.0 No No  
yajC 3.2 No No  
nrdR 2.5 No No  
cyoE 3.1 Yes [12] No Fnr [21]
cyoD 7.1 Yes [12] No Fnr [21]
cyoB 8.2 Yes [12] No Fnr [21]
cyoA 3.2 Yes [12] No Fnr [21]
fepA 10.7 Yes [12, 15, 16, 126129] Yes [128, 129]  
fes 39.8 Yes [12, 16, 127129] Yes [128, 129]  
entC 6.8 Yes [12, 15, 130] Yes [130]  
sucC 4.1 No No Fnr [21]
gpmA 5.6 Yes [12] No  
cmk 2.7 No No  
STM1013 2.8 No No  
STM1133 -4.2 No No Fnr [21]
ydiE 7.4 Yes [12, 15] No Rcs [131]
nth 2.9 No No  
STM1586 76.1 Yes [15] No  
ldhA -4.0 No No Fnr [21]
ynaF -37.3 No No Fnr [21]
tonB 11.4 Yes [12, 15] Yes [132]  
hns 3.1 Yes [29] Yes [29]  
STM1795 5.8 No No Fnr [21]
STM2186 -8.8 No No Fnr [21]
cirA 4.0 Yes [12, 15] Yes [133]  
eutC -4.1 No No Fnr [21]
eutB -3.2 No No Fnr [21]
yffB 2.6 No No  
iroB 4.6 Yes [15, 59] No  
iroN 9.1 No No  
sitA 53.8 Yes [15, 46, 61, 134138] No MntR [61]
yggU 3.5 No No  
yqjH 3.8 Yes [12] No  
secY 4.0 Yes [101] Yes [100]  
bfr 3.2 Yes [14, 79, 88] No  
bfd 5.9 Yes [12, 14, 15] No  
feoB 11.8 Yes[12, 14, 63, 134, 139, 140] No ArcA and Fnr [141]
STM3600 -6.8 No No Fnr [21]
STM3690 -4.2 No No Fnr [21]
rpoZ 3.9 No No  
udp -5.4 No No IscS [142]
sodA 9.1 Yes [14, 55, 82, 88, 143148] Yes [85, 146, 148] Fnr, ArcA, IHF, SoxRS [53, 81]
yjcD 2.8 No No  
dcuA -5.8 No No  
aspA -3.6 Yes [13, 15] No NarL[149, 150] ArcA [151]
ytfE 10.0 Yes [13] No NsrR [99]
fhuF 8.5 Yes [12, 13, 15] Yes [11, 152, 153]  
  1. a Genes from the present study that are regulated by Fur and possess a putative Fur-binding motif
  2. bFold change of expression in Δfur relative to the wt 14028s
  3. c Evidence of direct Fur binding the regulatory region of the gene
  4. d Regulation by other transcription factors besides Fur