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Table 3 Newly Identified Genes Regulated by Fur That Contain a Predicted Fur Binding Site

From: The Fur regulon in anaerobically grown Salmonella enterica sv. Typhimurium: identification of new Fur targets

Gene Function Fold Changea Predicted Fur Binding Sequenceb
rlgA Putative resolvase 2.8 AAAATTAAAATCGTTGGC
map c Methionine aminopeptidase 2.6 AAATTGAGAATCATTCTG
rpsB 30S ribosomal subunit protein S2 4.0 AAATTGAGAATCATTCTG
yajC Tranlocase protein, IISP family 3.2 GTAATGCAAAGCATAAAA
nrdR c Putative transcriptional regulator 2.5 GAAACGGTAAAAATTACC
sucC Succinyl-CoA synthetase, beta subunit 4.1 CTAAAGATAACGATTACC
cmk Cytidine monophosphate kinase 2.7 AAAAAGTAAATCATTGTC
STM1013 Gifsy-2 prophage, regulatory protein 2.8 AAAATCAAAATCAGTAAC
STM1133 c Putative dehydrogenase -4.2 ATAATGAGTAGAATTGTT
nth c Endonuclease III 2.9 GAAAAGCGTACCATTCCC
ldhA c Fermentative D-lactate dehydrogenase -4.0 AATATGCTTAAAATTATC
ynaF c Putative universal stress protein -37.3 GAAATAGATATAATTTAT
hns Histone like protein 3.1 ACAATGCTTATCATCACC
STM1795 c Homolog of glutamic dehydrogenase 5.8 AAAAAGATAAAAATAACC
STM2186 Putative glutamate synthase -8.8 AAATTGAGAATAGTTATT
eutC c Ethanolamine ammonia lyase -4.1 ATAATGCCCATCGTTTCC
eutB c Ethanolamine ammonia lyase -3.2 AAACTGATAAACATTGCC
yffB c Putative glutaredoxin 2.6 GAAATTCGAATAAATAAT
iroN c TonB-dependent siderophore receptor 9.1 CTAATGATAATAATTATC
yggU c Cytoplasmic protein 3.5 ATAACGCTAAGAATAAAC
STM3600 c Putative sugar kinase -6.8 CTGATGCTCATCATTATT
STM3690 Putative lipoprotein -4.2 ATAAACATTATAATTATA
rpoZ c RNA polymerase, omega subunit 3.9 AATAAGATAATCATATTC
udp c Uridine phosphorylase -5.4 CAATAAATAATCAATATC
yjcD c Putative xanthine/uracil permease 2.8 AAAAAGCAAACGATTATC
dcuA Anaerobic dicarboxylate transport protein -5.8 CAAATAACAACAATTTAA
  1. a Ratio of mRNA, Δfur/14028s
  2. b Predicted Fur binding site located within -400 to +50 bp relative to ATG
  3. c Indicates the predicted Fur binding site is located on the reverse strand