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Table 1 Clustal W alignment of microbial paaL genes and promoters.

From: Regulation of phenylacetic acid uptake is σ54 dependent in Pseudomonas putidaCA-3

Percentage Sequence Identity
- CA-3 F1 GB1 KT2440 L48 Pf5 ST W619 Y2 paaL Genes
CA-3 - 81.1 80.9 81 82.7 81.5 98.4 69.3 97.2 CA-3
F1 15.6 - 92.5 98.3 87.4 83 81.9 72 81.8 F1
GB1 14.3 78.7 - 92.5 87.9 83.4 81.3 73.1 81.5 GB1
KT2440 15.6 99.3 79.4 - 87.7 83 81.7 72.1 81.6 KT2440
L48 14.3 27 24.9 27 - 85.6 82.9 73.1 83.2 L48
Pf5 19.5 18.6 39.8 18.6 38.9 - 81.5 70.2 81.8 Pf5
ST 100 15.6 12.9 15.6 14.8 20.4 - 69.8 96.6 ST
W619 23.5 58.8 60 58.8 45.9 23.5 27.1 - 70.2 W619
Y2 100 15.6 11.8 15.6 11.7 20.4 100 27.1 - Y2
paaL Promoters CA-3 F1 GB1 KT2440 L48 Pf5 ST W619 Y2 -
  1. ClustalW alignment generated percentage sequence identities of paaL genes (top section) and respective promoters (bottom section) from a number of Pseudomonas species harbouring the PaCoA catabolon. CA-3, F1, GB-1, KT2440, ST, W619 and Y2 represent individual P. putida strains. The Pf5 and ST strains are members of the P. fluorescens group while L48 represents P. entomophila L48.