RT
|
Isolate namea
|
RFLP typeb
|
IIIB-specific PCRc
|
Alleles at the following loci
|
---|
| | | |
recA
|
gyrB
|
fliC
|
cepIR
|
dsbA
|
---|
Group 1 (RT-104-complex)
| | | | | | | |
20
|
MexII-195
|
AD
|
+
|
14
|
9
|
5
|
4
|
2
|
26 (3)d
|
MCII-88e
|
AD
|
+
|
14
|
1
|
3
|
2
|
1
|
34 (8)d
|
MVP-C2-23e
|
AD
|
-
|
14
|
9
|
2
|
5
|
1
|
35 (2)d
|
MVP-C2-60e
|
AD
|
+
|
14
|
8
|
2
|
5
|
1
|
37 (2)d
|
MDII-107re
|
AD
|
-
|
14
|
4
|
2
|
5
|
1
|
40
|
MVP-C2-21
|
AD
|
-
|
14
|
9
|
2
|
5
|
2
|
54
|
MexII-989
|
AD
|
+
|
14
|
4
|
5
|
4
|
1
|
55 (2)d
|
MDIII-T18e
|
AD
|
+
|
14
|
8
|
3
|
4
|
1
|
56
|
MexII-992
|
AD
|
-
|
14
|
8
|
2
|
1
|
2
|
58
|
MexII-1011
|
AD
|
-
|
14
|
9
|
1
|
6
|
1
|
59 (2)d
|
MexII-1005e
|
AD
|
+
|
14
|
9
|
1
|
3
|
2
|
60 (2)d
|
MexII-983e
|
AD
|
-
|
14
|
9
|
5
|
3
|
1
|
72
|
MCII-179
|
AD
|
+
|
14
|
1
|
4
|
2
|
1
|
77
|
MCII-13
|
AD
|
+
|
14
|
1
|
4
|
2
|
1
|
79 (2)d
|
MVP-C2-81e
|
AD
|
-
|
14
|
9
|
2
|
3
|
1
|
81 (6)d
|
MVP-C1-16e
|
AD
|
-
|
14
|
8
|
2
|
4
|
1
|
82 (3)d
|
MVP-C2-2e
|
AD
|
-
|
14
|
9
|
2
|
4
|
1
|
84
|
MDIII-P152
|
AD
|
-
|
14
|
9
|
3
|
4
|
2
|
85
|
MDIII-P253
|
AD
|
+
|
14
|
4
|
3
|
4
|
1
|
86
|
MDIII-P292
|
AD
|
-
|
14
|
8
|
5
|
1
|
1
|
87
|
MVP-C1-15
|
AD
|
-
|
14
|
8
|
2
|
4
|
2
|
88
|
MDIII-P3
|
AD
|
+
|
14
|
9
|
1
|
4
|
1
|
89
|
MCII-23
|
AD
|
+
|
14
|
2
|
2
|
5
|
1
|
95 (2)d
|
MCII-35e
|
AD
|
+
|
14
|
1
|
2
|
2
|
2
|
96
|
MCII-134
|
AD
|
+
|
14
|
1
|
3
|
2
|
2
|
97
|
MVP-C2-1
|
AD
|
+
|
14
|
7
|
2
|
4
|
2
|
98 (2)d
|
MDII-125re
|
AD
|
+
|
14
|
10
|
2
|
4
|
1
|
99
|
MDII-103r
|
AD
|
-
|
14
|
9
|
3
|
4
|
1
|
104*
|
MDII-105r
|
AD
|
+
|
14
|
4
|
2
|
4
|
1
|
104*
|
MVP-C1-79
|
AD
|
-
|
14
|
4
|
2
|
4
|
1
|
106 (2)d
|
MDII-144pe
|
AD
|
+
|
14
|
4
|
2
|
4
|
2
|
110
|
MVP-C2-84
|
AD
|
-
|
14
|
4
|
2
|
2
|
2
|
111
|
MVP-C2-67
|
AD
|
-
|
14
|
8
|
2
|
1
|
1
|
113
|
MDII-110r
|
AD
|
-
|
14
|
10
|
2
|
5
|
1
|
116
|
MDIII-T258
|
AD
|
+
|
14
|
4
|
2
|
1
|
1
|
122
|
MexII-858
|
AD
|
-
|
14
|
9
|
2
|
3
|
2
|
Singletons
| | | | | | | | |
19
|
MexII-125
|
AD
|
-
|
14
|
9
|
6
|
1
|
1
|
38
|
MDIII-T109
|
AD
|
+
|
14
|
9
|
4
|
1
|
2
|
61
|
MexII-831
|
AD
|
-
|
14
|
10
|
3
|
10
|
1
|
76
|
MCII-182
|
AD
|
+
|
14
|
1
|
5
|
6
|
1
|
- a, b, c, *see legend Table 1.
- dIn parenthesis, no. of isolates with same RT. RT26 (MCII-88, MCIII-CA-1, MCIII-CC-35); RT34 (MVP-C2-23, MVP-C2-53, MVP-C2-57, MVP-C2-63, MVP-C2-64, MVP-C2-76, MVP-C2-82, MDII-116r); RT35 (MVP-C2-60, MVP-C2-62); RT 37 (MDII-107r, MVP-C2-58); RT55 (MDIII-T18, MexII-829); RT59 (MexII-1005, MexII-1006); RT60 (MexII-983, MexII-984); RT79 (MVP-C2-81, MVP-C2-90); RT81 (MVP-C1-16, MVP-C1-21, MVP-C1-22, MVP-C1-78, MVP-C2-18, MDIII-P41); RT82 (MVP-C2-2, MDIII-B659, MDIII-P115); RT95 (MCII-35, MCII-36); RT98 (MDII-125r, MVP-C2-121p); RT106 (MDII-144p, MDIII-T301).
- erepresentative isolate of RT.