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Table 2 Restriction types (RTs) and eBURST grouping of Italian and Mexican maize-rhizosphere BCC6 isolates.

From: Genetic relationships among Italian and Mexican maize-rhizosphere Burkholderia cepacia complex (BCC) populations belonging to Burkholderia cenocepaciaIIIB and BCC6 group

RT Isolate namea RFLP typeb IIIB-specific PCRc Alleles at the following loci
     recA gyrB fliC cepIR dsbA
Group 1 (RT-104-complex)        
   20 MexII-195 AD + 14 9 5 4 2
   26 (3)d MCII-88e AD + 14 1 3 2 1
   34 (8)d MVP-C2-23e AD - 14 9 2 5 1
   35 (2)d MVP-C2-60e AD + 14 8 2 5 1
   37 (2)d MDII-107re AD - 14 4 2 5 1
   40 MVP-C2-21 AD - 14 9 2 5 2
   54 MexII-989 AD + 14 4 5 4 1
   55 (2)d MDIII-T18e AD + 14 8 3 4 1
   56 MexII-992 AD - 14 8 2 1 2
   58 MexII-1011 AD - 14 9 1 6 1
   59 (2)d MexII-1005e AD + 14 9 1 3 2
   60 (2)d MexII-983e AD - 14 9 5 3 1
   72 MCII-179 AD + 14 1 4 2 1
   77 MCII-13 AD + 14 1 4 2 1
   79 (2)d MVP-C2-81e AD - 14 9 2 3 1
   81 (6)d MVP-C1-16e AD - 14 8 2 4 1
   82 (3)d MVP-C2-2e AD - 14 9 2 4 1
   84 MDIII-P152 AD - 14 9 3 4 2
   85 MDIII-P253 AD + 14 4 3 4 1
   86 MDIII-P292 AD - 14 8 5 1 1
   87 MVP-C1-15 AD - 14 8 2 4 2
   88 MDIII-P3 AD + 14 9 1 4 1
   89 MCII-23 AD + 14 2 2 5 1
   95 (2)d MCII-35e AD + 14 1 2 2 2
   96 MCII-134 AD + 14 1 3 2 2
   97 MVP-C2-1 AD + 14 7 2 4 2
   98 (2)d MDII-125re AD + 14 10 2 4 1
   99 MDII-103r AD - 14 9 3 4 1
   104* MDII-105r AD + 14 4 2 4 1
   104* MVP-C1-79 AD - 14 4 2 4 1
   106 (2)d MDII-144pe AD + 14 4 2 4 2
   110 MVP-C2-84 AD - 14 4 2 2 2
   111 MVP-C2-67 AD - 14 8 2 1 1
   113 MDII-110r AD - 14 10 2 5 1
   116 MDIII-T258 AD + 14 4 2 1 1
   122 MexII-858 AD - 14 9 2 3 2
Singletons         
   19 MexII-125 AD - 14 9 6 1 1
   38 MDIII-T109 AD + 14 9 4 1 2
   61 MexII-831 AD - 14 10 3 10 1
   76 MCII-182 AD + 14 1 5 6 1
  1. a, b, c, *see legend Table 1.
  2. dIn parenthesis, no. of isolates with same RT. RT26 (MCII-88, MCIII-CA-1, MCIII-CC-35); RT34 (MVP-C2-23, MVP-C2-53, MVP-C2-57, MVP-C2-63, MVP-C2-64, MVP-C2-76, MVP-C2-82, MDII-116r); RT35 (MVP-C2-60, MVP-C2-62); RT 37 (MDII-107r, MVP-C2-58); RT55 (MDIII-T18, MexII-829); RT59 (MexII-1005, MexII-1006); RT60 (MexII-983, MexII-984); RT79 (MVP-C2-81, MVP-C2-90); RT81 (MVP-C1-16, MVP-C1-21, MVP-C1-22, MVP-C1-78, MVP-C2-18, MDIII-P41); RT82 (MVP-C2-2, MDIII-B659, MDIII-P115); RT95 (MCII-35, MCII-36); RT98 (MDII-125r, MVP-C2-121p); RT106 (MDII-144p, MDIII-T301).
  3. erepresentative isolate of RT.