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Table 1 Restriction types (RTs) and eBURST grouping of Italian and Mexican maize-rhizosphere B. cenocepacia IIIB isolates.

From: Genetic relationships among Italian and Mexican maize-rhizosphere Burkholderia cepacia complex (BCC) populations belonging to Burkholderia cenocepaciaIIIB and BCC6 group

RT Isolate namea RFLP typeb IIIB-specific PCRc Alleles at the following loci
     recA gyrB fliC cepIR dsbA
Group 1         
   74 MDII-143p I + 9 10 2 4 1
   112 MDII-151p I + 9 8 2 4 1
Group 2         
   100 MDIII-B604 I + 9 9 4 4 1
   17 MexII-968 I + 9 9 1 4 1
Group 3 (RT-4-complex)        
   115 MDIII-B752 J' + 10 9 2 7 1
   21 MDIII-P378 J' + 10 4 2 1 1
   21 MexII-864 J' + 10 4 2 1 1
   3 MexII-57 J' + 10 10 2 1 2
   7 MexII-60 J' + 10 10 2 8 2
   7 MexII-857 J' + 10 10 2 8 2
   6 MexII-815 J' + 10 10 2 1 1
   53 MexII-845 J' + 10 8 1 1 1
   31 MexII-940 J' + 10 9 1 1 1
   36 MexII-945 J' + 10 4 2 6 1
   4* MexII-967 J' + 10 9 2 1 1
   67 MexII-974 J' + 10 8 2 6 1
   57 MexII-994 J' + 10 8 2 1 2
Group 4         
   50 MexII-867 ukd + 11 8 6 1 1
   46 MexII-976 I + 9 8 6 1 1
Singletons         
   80 MCII-168 J' + 10 5 3 6 2
   27 MDII-129r I + 9 4 2 6 2
   75 MDIII-B250 J' + 10 8 4 4 1
   114 MDIII-B716 I + 9 4 2 7 1
   28 MDIII-P410 I + 9 4 5 7 2
   22 MDIII-P461 J' + 10 4 2 7 2
   29 MDIII-T228 I + 9 4 4 1 1
   103 MDIII-T521 J' + 10 9 4 4 2
   70 MexII-206 uke + 13 10 5 7 2
   47 MexII-264 J' + 10 2 1 2 2
   48 MexII-828 J' + 10 2 2 4 1
   33 MexII-863 J' + 10 4 6 10 2
  1. * The asterisk denotes the ancestral clone of the clonal complex.
  2. aItalian isolates: MCII, MCIII, MVP-C1, MVP-C2, MDII, MDIII-B, MDIII-P, MDIII-T, followed by the number of isolate. Mexican isolates: MexII, followed by the number of isolate.
  3. brecA RFLP with HaeIII.
  4. cThe presence and absence of specific PCR amplification for B. cenocepacia IIIB is indicated by a signus "+" and "-", respectively.
  5. d, euk, unknown RFLP profiles: restriction profiles never recovered among BCC reference strains examined [56].