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Table 1 Restriction types (RTs) and eBURST grouping of Italian and Mexican maize-rhizosphere B. cenocepacia IIIB isolates.

From: Genetic relationships among Italian and Mexican maize-rhizosphere Burkholderia cepacia complex (BCC) populations belonging to Burkholderia cenocepaciaIIIB and BCC6 group

RT

Isolate namea

RFLP typeb

IIIB-specific PCRc

Alleles at the following loci

    

recA

gyrB

fliC

cepIR

dsbA

Group 1

        

   74

MDII-143p

I

+

9

10

2

4

1

   112

MDII-151p

I

+

9

8

2

4

1

Group 2

        

   100

MDIII-B604

I

+

9

9

4

4

1

   17

MexII-968

I

+

9

9

1

4

1

Group 3 (RT-4-complex)

       

   115

MDIII-B752

J'

+

10

9

2

7

1

   21

MDIII-P378

J'

+

10

4

2

1

1

   21

MexII-864

J'

+

10

4

2

1

1

   3

MexII-57

J'

+

10

10

2

1

2

   7

MexII-60

J'

+

10

10

2

8

2

   7

MexII-857

J'

+

10

10

2

8

2

   6

MexII-815

J'

+

10

10

2

1

1

   53

MexII-845

J'

+

10

8

1

1

1

   31

MexII-940

J'

+

10

9

1

1

1

   36

MexII-945

J'

+

10

4

2

6

1

   4*

MexII-967

J'

+

10

9

2

1

1

   67

MexII-974

J'

+

10

8

2

6

1

   57

MexII-994

J'

+

10

8

2

1

2

Group 4

        

   50

MexII-867

ukd

+

11

8

6

1

1

   46

MexII-976

I

+

9

8

6

1

1

Singletons

        

   80

MCII-168

J'

+

10

5

3

6

2

   27

MDII-129r

I

+

9

4

2

6

2

   75

MDIII-B250

J'

+

10

8

4

4

1

   114

MDIII-B716

I

+

9

4

2

7

1

   28

MDIII-P410

I

+

9

4

5

7

2

   22

MDIII-P461

J'

+

10

4

2

7

2

   29

MDIII-T228

I

+

9

4

4

1

1

   103

MDIII-T521

J'

+

10

9

4

4

2

   70

MexII-206

uke

+

13

10

5

7

2

   47

MexII-264

J'

+

10

2

1

2

2

   48

MexII-828

J'

+

10

2

2

4

1

   33

MexII-863

J'

+

10

4

6

10

2

  1. * The asterisk denotes the ancestral clone of the clonal complex.
  2. aItalian isolates: MCII, MCIII, MVP-C1, MVP-C2, MDII, MDIII-B, MDIII-P, MDIII-T, followed by the number of isolate. Mexican isolates: MexII, followed by the number of isolate.
  3. brecA RFLP with HaeIII.
  4. cThe presence and absence of specific PCR amplification for B. cenocepacia IIIB is indicated by a signus "+" and "-", respectively.
  5. d, euk, unknown RFLP profiles: restriction profiles never recovered among BCC reference strains examined [56].