Skip to main content

Table 4 All PPIs discovered in this study

From: The protein interaction map of bacteriophage lambda

  Bait Prey Bfun Pfun NN NC CC CN Vectors Notes
1. A A head head   NC CC CN 3 Possible
2. A Bet head rec G     1  
3. A FI head head   NC CC' CN' 3 Known
4. A NinF head ukn G     1  
5. A Nu1 head head G' NC' CC   3 Known
6. A Orf79 head unk G     1  
7. A V head tail G     1  
8. Cl Cl trx trx    CC   1 Known
9. Cl Kil trx other    CC   1  
10. Cll Cll trx trx   NC    1 known
11. C C head head   NC    1  
12. C Nu3 head head G' NC'    2 Known
13. C Orf79 head unk G     1  
14. D D head head   NC    1 Known
15. D E head head D     1 Known
16. E E head head D     1 Known
17. E Fi head head G NC CC' CN' 4 Known
18. E Nu3 head head DG'     2 2v
19. Ea8.5 Ea8.5 ihr unk   NC    1 Possible
20. Ea8.5 Int ihr rec G NC    2 2v
21. Ea8.5 Tfa ihr tail G     1  
22. Ea8.5 Stf ihr tail G    CN 2  
23. Ea8.5 Q ihr trx G     1  
24. Ea8.5 Ren ihr unk   NC    1  
25. FI NinB head rec     CN 1  
26. G G tail tail G   CC CN 3 Possible
27. G H tail tail D'     1 Known
28. G S' tail lysis G    CN 2 2v
29. G T tail tail    CC   1 Likely
30. H Cll tail trx   NC    1  
31. H Ren tail unk   NC    1  
32. H V tail tail   NC    1 Known
33. Int A rec head G     1  
34. Int Bet rec rec G     1 Possible
35. Int Int rec rec G NC    2 known
36. Int Orf48 rec unk G     1  
37. Int Tfa rec tail     CN 1  
38. Int V rec tail G     1  
39. M Fi tail head    CC' CN' 2 2v
40. M G tail tail G   CC CN 3 Possible
41. M NinF tail unk G    CN 2 2v
42. M Nu3 tail head     CN 1  
43. M Orf35 tail unk   NC CC   2 2v
44. N Bet trx rec G     1  
45. N Ea47 trx unk G     1  
46. N L trx tail G     1  
47. N Nu1 trx head   NC    1  
48. N V trx tail G     1  
49. NinD Cro unk trx G     1  
50. NinD K unk tail G NC    2 2v
51. NinD Q unk trx G     1  
52. NinI N unk trx G     1  
53. NinI Q unk trx G     1  
54. Nu1 Nu1 head head   NC CC   2 2v
55. Nu1 Tfa head tail G     1  
56. Nu1 Orf64 head unk    CC   1  
57. Nu1 R head lysis D     1  
58. Nu1 V head tail G     1  
59. Nu3 Nu3 head head G     1  
60. Nu3 Z head tail G     1  
61. O P repl repl D     1 Known
62. Orf35 Cll unk trx   NC    1  
63. Orf35 Int unk rec G NC    2 2v
64. Orf35 K unk tail G NC    2 2v
65. Orf35 Orf78 unk unk   NC    1  
66. Orf35 Ren unk unk   NC    1  
67. Orf48 Orf48 unk unk   NC    1 Possible
68. Orf79 Orf79 unk unk    CC CN 2 Possible
69. Orf63 N rec trx G     1  
70. Orf63 Orf78 rec unk   NC    1  
71. Orf63 P rec repl   NC    1  
72. Orf63 Q rec trx G     1  
73. Orf63 Ren rec unk   NC    1  
74. Orf63 Rz1 rec lysis G     1  
75. P Bet repl rec G     1  
76. P Q repl trx G     1  
77. RexB A conv head   NC    1  
78. RexB Orf48 conv unk   NC    1  
79. RexB Orf78 conv unk   NC    1  
80. RexB Ren conv unk   NC    1  
81. S' S' lysis lysis G     1  
82. U Ea47 tail unk    CC CN 2 2v
83. U NinB tail rec     CN 1  
84. U NinE tail unk     CN 1  
85. U NinF tail unk     CN 1  
86. U Orf78 tail unk   NC    1  
87. U U tail tail    CC   1 known
88. U Xis tail rec   NC    1  
89. V G tail tail D NC    2 Known
90. W B head head   NC    1 Known
91. U Cl tail trx     CN 1  
92. M Rz1 tail lysis    CC CN 2 2v
93. Orf79 NinB unk rec     CN 1  
94. Int G rec tail G    CN 2 2v
95. Ea.85 NinB unk rec     CN 1  
96. S' NinB lysis rec     CN 1  
97. S' Rz1 lysis lysis     CN 1  
  1. Bfun = bait protein function, Pfun = prey protein function group (rec = recombination, repl = replication, trx = transcription, conv = lysogenic conversion, ihr - inhibition of host replication [76]). NN, CN, NC, CC indicated the fusion type of the bait and prey proteins (see text). The two NN vectors are indicated by G (pGBK/pGAD) and D (pDEST22/32). Interaction that have been found in inverted prey-bait combinations are indicated by a prime sign ('). Interactions that have been found in both bait-prey and prey-bait orientations are indicated by bold and primes (e.g. NC'), respectively. Interactions without any note are unexpected and may not be physiologically relevant. 2v = interactions found with 2 vector pairs. Stf = Orf314.