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Table 3 Clusters from Test 3 datasets

From: In Silico identification of pathogenic strains of Cronobacter from Biochemical data reveals association of inositol fermentation with pathogenicity

Cronobacterspecies

MLST Type

Cluster 1: potential non-pathogenic

Source (number of strains)

Cluster 2: potential pathogenic

Source (number of strains)

C. sakazakii

1

IF(4), C(1), Faeces(1)

MP(1)

C. sakazakii

3

IF(1), FuF(2)

FuF(2), U(1)

C. sakazakii

4

C(5), IF(1), Washing Brush(1)

C(3), IF(6), MP(1), E(1), U(1)

C. sakazakii

8

C(3)

C(2)

C. sakazakii

9

WF(1)

 

C. sakazakii

12

U(1), WF(1)

C(1)

C. sakazakii

13

C(1)

 

C. sakazakii

14

IF(1)

 

C. sakazakii

15

C(1)

 

C. sakazakii

16

Spices(150)

 

C. sakazakii

17

IF(1)

 

C. sakazakii

18

C(1)

 

C. sakazakii

21

F(1)

 

C. sakazakii

31

 

C(1)

C. malonaticus

7

C(2), WF(1), Faeces(1)

C(1)

C. malonaticus

10

Herbs(1)

 

C. malonaticus

11

 

C(1)

C. turicensis

5

C(1)

MP(1) C(1)

C. turicensis

19

U(1)

 

C. turicensis

32

Infant Food(1)

 

C. dublinensis

36

U(1)

 

C. dublinensis

38

U(1)

 

C. dublinensis

42

U(1)

 

C. universalis

54

 

Freshwater(1)

  1. For abbreviations in this table see footnote to Table 1. Sources of isolation and strain numbers are given in full in Additional File 1.
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