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Table 4 SNP and antibiotic resistance gene profiles of E. faecalis isolates and their corresponding Sequence Types (STs)

From: SNP diversity of Enterococcus faecalis and Enterococcus faecium in a South East Queensland waterway, Australia, and associated antibiotic resistance gene profiles

SNP profile SNP ID No of isolates Antibiotic resistance [Identified genetic determinants] Corresponding sequence Types (STs) for SNP profiles in MLST
ACCAAACC 1 2 Cip IR [gyrA]; Tet R [ tetM] ST4, ST22, ST32, ST129, ST202
ACCAAACT 2 5 Tet R [tetM] ST274
ACCAAACT 2 1 Gen IR [aac(6')-aph(2')] Tet R [ tetM]  
ACCGAGCT 3 1 No antibiotic resistance detected ST277
ACCGAGTT 4 1 No antibiotic resistance detected ST123
ACCGTGCC 5 2 Gen IR [aac(6')-aph(2')] ST76
ACTAAGCT 6 1 Gen R [aac(6')-aph(2')] ST278
ACTATGCC a 7 1 Gen R [aac(6')-aph(2')] ST79, ST82
ACTGTGTC 8 1 No antibiotic resistance detected ST414N
ATCAAACC 9 3 Gen R [aac(6')-aph(2')]; Cip IR [gyrA] ST5, ST21, ST46, ST50, ST70, ST145, ST152, ST157
ATCAAACC 9 1 Gen IR [aac(6')-aph(2')]  
ATCAAACC 9 1 Gen R [aac(6')-aph(2')]  
ATCGTGCC 10 4 Gen IR [aac(6')-aph(2')] ST143
ATCGTGTT 11 1 Gen R [aac(6')-aph(2')] ST230
ATTAAACC 12 1 Cip IR [gyrA] ST255
ATTAAGCT 13 2 Gen R [aac(6')-aph(2')]; Cip IR [gyrA] ST139, ST181, ST183, ST241
ATTATGCC 14 3 Gen R [aac(6')-aph(2')]; Cip IR [gyrA] ST170
GCCAAACT 15 1 No antibiotic resistance detected ST410
GCCATGCT 16 1 Gen R [aac(6')-aph(2')]; Cip IR [gyrA] ST81, ST164
GCCATGCT 16 7 Gen R [aac(6')-aph(2')]  
GCCGTACC 17 1 No antibiotic resistance detected ST110
GCCGTGCC 18 1 No antibiotic resistance detected ST27, ST124
GCCGTGCT 19 1 Gen R [aac(6')-aph(2')] ST418N
GCCGTGTC 20 1 No antibiotic resistance detected ST86
GCTATACC 21 1 Gen R [aac(6')-aph(2')] ST39, ST45, ST69, ST96, ST116
GCTGTACC 22 1 No antibiotic resistance detected ST260, ST396
GCTGTGTT 23 1 No antibiotic resistance detected ST201
ATTAAGCC 24 1 Gen IR [aac(6')-aph(2')] ST419N
GTCGTATT 25 1 Gen R [aac(6')-aph(2')] ST125, ST165, ST167
GTCGTGTT 26 2 Gen R [aac(6')-aph(2')]; Cip IR [gyrA] ST36, ST118, ST180
GTCGTGTT 26 1 Cip IR [gyrA]  
GTTATGCC 27 1 Gen R [aac(6')-aph(2')] ST108, ST122
GTTGAGTC 28 1 Gen R [aac(6')-aph(2')]; Cip IR [gyrA] ST64, ST101, ST161, ST205
GTTATGCT 29 1 No antibiotic resistance detected ST175
  1. aSNP profiles which were present in hospital isolates are bold and underlined
  2. SNP profiles in bold text are isolates with the same SNP profiles but with different antibiotic resistant gene profiles.
  3. Amp; ampicillin, Cip; ciprofloxacin, Gen; gentamicin, Tet; tetracycline,
  4. R Resistant, IR Intermediate resistant
  5. N New sequence types identified in the present study
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BMC Microbiology

ISSN: 1471-2180

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