Table 4 SNP and antibiotic resistance gene profiles of E. faecalis isolates and their corresponding Sequence Types (STs)

ACCAAACC

1

2

Cip ^IR [gyrA]; Tet ^R [ tetM]

ST4, ST22, ST32, ST129, ST202

ACCAAACT

2

5

Tet ^R [tetM]

ST274

ACCAAACT

2

1

Gen ^IR [aac(6')-aph(2')] Tet ^R [ tetM]

ACCGAGCT

3

1

No antibiotic resistance detected

ST277

ACCGAGTT

4

1

No antibiotic resistance detected

ST123

ACCGTGCC

5

2

Gen ^IR [aac(6')-aph(2')]

ST76

ACTAAGCT

6

1

Gen ^R [aac(6')-aph(2')]

ST278

ACTATGCC ^a

7

1

Gen ^R [aac(6')-aph(2')]

ST79, ST82

ACTGTGTC

8

1

No antibiotic resistance detected

ST414^N

ATCAAACC

9

3

Gen ^R [aac(6')-aph(2')]; Cip ^IR [gyrA]

ST5, ST21, ST46, ST50, ST70, ST145, ST152, ST157

ATCAAACC

9

1

Gen ^IR [aac(6')-aph(2')]

ATCAAACC

9

1

Gen ^R [aac(6')-aph(2')]

ATCGTGCC

10

4

Gen ^IR [aac(6')-aph(2')]

ST143

ATCGTGTT

11

1

Gen ^R [aac(6')-aph(2')]

ST230

ATTAAACC

12

1

Cip ^IR [gyrA]

ST255

ATTAAGCT

13

2

Gen ^R [aac(6')-aph(2')]; Cip ^IR [gyrA]

ST139, ST181, ST183, ST241

ATTATGCC

14

3

Gen ^R [aac(6')-aph(2')]; Cip ^IR [gyrA]

ST170

GCCAAACT

15

1

No antibiotic resistance detected

ST410

GCCATGCT

16

1

Gen ^R [aac(6')-aph(2')]; Cip ^IR [gyrA]

ST81, ST164

GCCATGCT

16

7

Gen ^R [aac(6')-aph(2')]

GCCGTACC

17

1

No antibiotic resistance detected

ST110

GCCGTGCC

18

1

No antibiotic resistance detected

ST27, ST124

GCCGTGCT

19

1

Gen ^{R [}aac(6')-aph(2')]

ST418^N

GCCGTGTC

20

1

No antibiotic resistance detected

ST86

GCTATACC

21

1

Gen ^R [aac(6')-aph(2')]

ST39, ST45, ST69, ST96, ST116

GCTGTACC

22

1

No antibiotic resistance detected

ST260, ST396

GCTGTGTT

23

1

No antibiotic resistance detected

ST201

ATTAAGCC

24

1

Gen ^{IR [}aac(6')-aph(2')]

ST419^N

GTCGTATT

25

1

Gen ^R [aac(6')-aph(2')]

ST125, ST165, ST167

GTCGTGTT

26

2

Gen ^R [aac(6')-aph(2')]; Cip ^IR [gyrA]

ST36, ST118, ST180

GTCGTGTT

26

1

Cip ^IR [gyrA]

GTTATGCC

27

1

Gen ^R [aac(6')-aph(2')]

ST108, ST122

GTTGAGTC

28

1

Gen ^R [aac(6')-aph(2')]; Cip ^IR [gyrA]

ST64, ST101, ST161, ST205

GTTATGCT

29

1

No antibiotic resistance detected

ST175