Transcriptomes of Frankia sp. strain CcI3 in growth transitions

BMC Microbiology

Table 4 Fold changes of phage related ORFs¹

Feature ID	Annotation	5dNH4 vs 3dNH4	3dN2 vs 3dNH4	3dN2 vs 5dNH4
Francci3_0075	phage SPO1 DNA polymerase-related protein	-1.02*	1.19*	1.21*
Francci3_0114	phage integrase	-1.10*	1.54	1.70
Francci3_0407	phage integrase	1.48	1.23	-1.20
Francci3_0878	phage integrase	1.05*	1.55	1.48
Francci3_1095	phage integrase	1.46	1.62	1.11
Francci3_1144	phage integrase	2.72	1.63	-1.67
Francci3_1203	phage integrase	1.39	1.66	1.20
Francci3_1870	phage integrase-like SAM-like	3.05	1.53	-2.00
Francci3_2053	phage integrase-like SAM-like	-1.32	1.83	2.43
Francci3_2147	phage integrase	1.92	1.52	-1.26
Francci3_2228	phage shock protein A, PspA	2.47	1.43	-1.73
Francci3_2304	phage integrase	1.60	-1.24*	-1.99
Francci3_2344	phage integrase	1.59	1.20*	-1.32
Francci3_2443	putative phage-related terminase large subunit	1.34	1.84	1.37
Francci3_2954	bacteriophage (phiC31) resistance gene PglY	1.57	1.38	-1.14*
Francci3_2955	bacteriophage (phiC31) resistance gene PglZ	1.47	1.22*	-1.21*
Francci3_3052	phage integrase	1.07*	1.43	1.34
Francci3_3350	phage integrase	1.42	1.74	1.22
Francci3_3388	phage integrase	1.55	1.84	1.19
Francci3_3390	phage integrase	1.89	-1.09*	1.73
Francci3_3532	phage integrase	2.02	1.48	-1.36
Francci3_3535	phage shock protein A, PspA	-1.98	-1.86	1.06*
Francci3_3583	phage integrase	-1.34	1.39	1.86
Francci3_3734	phage integrase-like SAM-like	1.34	1.62	1.21
Francci3_4274	phage integrase	4.52	1.60	-2.83
Francci3_4338	phage integrase	-1.36	1.69	2.30

¹Fold changes calculated as quotients of RPKM values
*Insignificant p value as determined by Kal's ztest.
Negative values indicate a fold reduction of expression in the reference (later) condition.

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