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Table 4 Fold changes of phage related ORFs1

From: Transcriptomes of Frankia sp. strain CcI3 in growth transitions

Feature ID Annotation 5dNH4 vs 3dNH4 3dN2 vs 3dNH4 3dN2 vs 5dNH4
Francci3_0075 phage SPO1 DNA polymerase-related protein -1.02* 1.19* 1.21*
Francci3_0114 phage integrase -1.10* 1.54 1.70
Francci3_0407 phage integrase 1.48 1.23 -1.20
Francci3_0878 phage integrase 1.05* 1.55 1.48
Francci3_1095 phage integrase 1.46 1.62 1.11
Francci3_1144 phage integrase 2.72 1.63 -1.67
Francci3_1203 phage integrase 1.39 1.66 1.20
Francci3_1870 phage integrase-like SAM-like 3.05 1.53 -2.00
Francci3_2053 phage integrase-like SAM-like -1.32 1.83 2.43
Francci3_2147 phage integrase 1.92 1.52 -1.26
Francci3_2228 phage shock protein A, PspA 2.47 1.43 -1.73
Francci3_2304 phage integrase 1.60 -1.24* -1.99
Francci3_2344 phage integrase 1.59 1.20* -1.32
Francci3_2443 putative phage-related terminase large subunit 1.34 1.84 1.37
Francci3_2954 bacteriophage (phiC31) resistance gene PglY 1.57 1.38 -1.14*
Francci3_2955 bacteriophage (phiC31) resistance gene PglZ 1.47 1.22* -1.21*
Francci3_3052 phage integrase 1.07* 1.43 1.34
Francci3_3350 phage integrase 1.42 1.74 1.22
Francci3_3388 phage integrase 1.55 1.84 1.19
Francci3_3390 phage integrase 1.89 -1.09* 1.73
Francci3_3532 phage integrase 2.02 1.48 -1.36
Francci3_3535 phage shock protein A, PspA -1.98 -1.86 1.06*
Francci3_3583 phage integrase -1.34 1.39 1.86
Francci3_3734 phage integrase-like SAM-like 1.34 1.62 1.21
Francci3_4274 phage integrase 4.52 1.60 -2.83
Francci3_4338 phage integrase -1.36 1.69 2.30
  1. 1Fold changes calculated as quotients of RPKM values
  2. *Insignificant p value as determined by Kal's ztest.
  3. Negative values indicate a fold reduction of expression in the reference (later) condition.