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Table 3 Fold changes of nif cluster ORF expression levels1

From: Transcriptomes of Frankia sp. strain CcI3 in growth transitions

Feature ID Annotation 5dNH4 vs 3dNH4 3dN2 vs 3dNH4 3dN2 vs 5dNH4
Francci3_4473 thiamine pyrophosphate enzyme-like TPP-binding 1.28 1.89 1.48
Francci3_4474 pyruvate flavodoxin/ferredoxin oxidoreductase-like 1.60 1.93 1.20
Francci3_4475 aminotransferase, class V 2.90 1.52 0.90
Francci3_4476 UBA/THIF-type NAD/FAD binding fold 1.20* 2.08 1.73
Francci3_4477 HesB/YadR/YfhF 2.09 2.00 0.04
Francci3_4478 nitrogenase cofactor biosynthesis protein NifB 1.35 2.17 1.61
Francci3_4479 NifZ 0.54 1.45 2.23
Francci3_4480 nitrogen fixation protein NifW 2.49 2.14 0.16*
Francci3_4481 protein of unknown function DUF683 2.81 1.75 0.61
Francci3_4482 protein of unknown function DUF269 0.23* 1.44 1.77
Francci3_4483 Dinitrogenase iron-molybdenum cofactor biosynthesis 1.82 2.03 1.12*
Francci3_4484 nitrogenase molybdenum-iron cofactor biosynthesis protein NifN 2.55 1.78 0.43
Francci3_4485 nitrogenase MoFe cofactor biosynthesis protein NifE 1.47 1.92 1.31
Francci3_4486 nitrogenase molybdenum-iron protein beta chain 1.16* 2.40 2.08
Francci3_4487 nitrogenase molybdenum-iron protein alpha chain 1.62 2.94 1.82
Francci3_4488 nitrogenase iron protein 1.34 3.71 2.77
  1. 1Fold changes calculated as quotients of RPKM values
  2. * Insignificant p value as determined by Kal's ztest.