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Table 1 Primers used in this work

From: "Glucose and ethanol-dependent transcriptional regulation of the astaxanthin biosynthesis pathway in Xanthophyllomyces dendrorhous"

Primer

Gene

Direction

Sequence (5' to 3')

Location

mactF-RT

act

F

CCGCCCTCGTGATTGATAAC

Spanning exons 2 & 3

mactR-RT

act

R

TCACCAACGTAGGAGTCCTT

Spanning exons 4 & 5

mmcrtYBF2-RT

crtYB(mm)

F

TCGCATATTACCAGATCCATCTGA

Spanning exons 1 & 2

mmcrtYBR2-RT

crtYB(mm)

R

GGATATGTCCATGCGCCATT

Exon 2

amcrtYBF-RT

crtYB(am)

F

GTGTGCATATGTGTTGCAACCA

Spanning exon 1 & intron 2

amcrtYBR-RT

crtYB(am)

R

AGAAGGTGCCTAGTTGCCAAGA

Exon 3

mmcrtIF-RT

crtI(mm)

F

CATCGTGGGATGTGGTATCG

Spanning exons 1 & 2

mmcrtIR-RT

crtI(mm)

R

GGCCCCTGATCGAATCGATAA

Spanning exons 3, 4, 5

amcrtIF-RT

crtI(am)

F

CGTGGTTTAATCCGTATCAGC

Spanning exon 1 & intron 1

amcrtIR2-RT

crtI(am)

R

TCTCGAACACCGTGACCT

Exon 2

mcrtSF-RT

crtS

F

ATGGCTCTTGCAGGGTTTGA

Spanning exons 6 & 7

mcrtSR-RT

crtS

R

TGCTCCATAAGCTCGATCCCAA

Spanning exons 8 & 9

grg2real FW1

grg2

F

CATCAAGACCTCTGTCACCAAC

Spanning exons 1 & 2

grg2real RV1

grg2

R

TTGGCGTCAGACGAGGACT

Exon 3

pdcreal FW1

PDC

F

TCAACACTGAGCTGCCCACT

Spanning exons 5 & 6

pdcreal RV1

PDC

R

ATTCCGAATCGGGAAGCACA

Exon 6

  1. F: Forward, R: Reverse; (mm): mature transcript, (am): alternatively spliced transcript.