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Table 3 Putative EPS genes in H.somni 2336 and 129Pt with proposed roles in polysaccharide synthesis

From: Identification, structure, and characterization of an exopolysaccharide produced by Histophilus somniduring biofilm formation

Gene ORF
(HSM-H. somni2336 and HS- H. somni129Pt)
Protein annotation No. of amino acids, predicted mass (kDa) % Similarity to another protein
galU HSM_1063
HS_1117
UTP-glucose-1-phosphate uridylyltransferase 295, 32.2 70, to glucose-1-phosphate uridylyltransferase, galU (E. coli)
manB HSM_1062
HS_1118
Phosphomannomutase 454, 50.3 81, to phosphomannomutase, cpsG (E. coli)
csrA HSM_1061
HS_1119
Carbon storage regulator 60, 6.75 89, to pleiotropic regulatory protein for carbon source metabolism, csrA (E. coli)
pldB HSM_1242
HS_0775
Lysophospholipase 318, 37.4 49, to lysophospholipase L2, pldB (E. coli)
ybhA HSM_1241
HS_0774
Haloacid dehalogenase-like hydrolase 273, 30.8 60, to phosphatase//phospho transferase, ybhA (E. coli)
araD HSM_1240
HS_0773
L-ribulose-5-phosphate 4-epimerase 231, 25.8 82, to L-ribulose-5-phosphate 4-epimerase, yiaS (E. coli)
sgbU HSM_1239
HS_0772
Putative L-xylulose-5-phosphate 3-epimerase 290, 33.2 84, to L-xylulose 5-phosphate 3-epimerase, yiaQ (E. coli)
rmpA HSM_1238
HS_0771
3-keto-L-gulonate-6-phosphate decarboxylase 215, 23.6 64, to 3-keto-L-gulonate 6-phosphate decarboxylase, yiaQ (E. coli)
xylB HSM_1237
HS_0770
L-xylulose kinase 484, 53.7 75, to L-xylulose kinase, lyxK (E. coli)
rbs1C HSM_1236
HS_0769
Ribose ABC transporter, permease 342, 32.9 59, to D-ribose transporter subunit, rbsc (E. coli)
rbs1A HSM_1235
HS_0768
Ribose ABC transporter, ATPase component 496, 56.1 60, to D-ribose transporter subunit, ATP-binding component, rbsA (E. coli K12)
rbs1B HSM_1234
HS_0767
ABC-type sugar transport system, periplasmic component 312, 31.0 56, to D-ribose transporter subunit, periplasmic component (E. coli )
glsS HSM_1233
HS_0766
Gluconolaconase 295, 32.6 46, to gluconolactonase, gnl
(Zymomonas mobilis)
rbs2B HSM_1232
HS_0765
ABC-type sugar-binding periplasmic protein 369, 37.2 81, to hypothetical protein (Yersinia intermedia ATCC 29909)
rbs2C HSM_1231
HS_0764
Ribose ABC transporter, permease 349, 36.9 90, to inner-membrane translocator (Yersinia intermedia ATCC 29909)
rbs2A HSM_1230
HS_0763
Ribose ABC transporter, ATPase component 505, 55.8 81, to ABC transporter-related protein (Yersinia intermedia ATCC 29909)
dctP HSM_1229
HS_0762
TRAP C4-dicarboxylate transport system, periplasmic component 328, 33.4 52, to C4-dicarboxylate binding protein, periplasmic component, dctP (Rhodobacter capsulatus)
dctM HSM_1228
HS_0761
TRAP C4-dicarboxylate transport system, permease component 426, 43.2 59, to C4-dicarboxylate -binding protein, permease component, dctM (Rhodobacter capsulatus)
dctQ HSM_1227
HS_0760
Tripartite ATP-independent periplasmic transporter 160, 17.8 40, to tripartite ATP-independent periplasmic transporter, dctQ
(Rhodobacter capsulatus)