Table 1 Latent variables related to specific adaptation
Latent variables | Related strains | Functions of selected enriched genes by ICA | |
|---|---|---|---|
Up regulated | Down regulated | ||
2 | B12-4, B12-7 | Antibiotic resistance Iron metabolism Citronellol/leucine catabolism | - |
4 | B6-0, B6-4 | LPS modification | Flagellum biogenesis |
16 | CF114-1973 | Fimbrial biogenesis | - |
20 | CF66-2008 | LPS modification | - |
22 | CF173-2002 | - | - |
14 | Early stage isolates from 1973 | Type III secretion | - |
6 | Late stage isolates | Antimicrobial peptide tolerance | - |
10 | Late stage isolates | Potassium uptake system | Quorum sensing |
18 | Late stage isolates | Alginate biosynthesis | Motilities |