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Table 3 Results from BLAST analysis of sequenced DGGE bands.

From: A simplified and cost-effective enrichment protocol for the isolation of Campylobacter spp. from retail broiler meat without microaerobic incubation

Marker

Band ID

BLAST nearest homology

(GenBank accession number)

% Identity

A

K 1

Acinetobacter sp. (FN563421)

96

B

K 2

Uncultured Myxococcales bacterium (FJ435015)

93

C

K 3

Lactobacillus sp. L21 (AF159000)

87

D

K 4

Lactobacillus sp. (FJ971864)

95

E

K 5

Lactobacillus sp. JN4 (AF157041)

90

Microaerobic

subsamplea

Campylobacter jejuni (GQ479820)

98

  

Lactobacillus sp. 30A (FJ971864)

98

  

Pseudomonas sp. CB10 (EU482914)

98

  

Pseudomonas sp. R-35702 (AM886093)

97

Aerobic

subsamplea

Campylobacter jejuni (GQ479820)

98

  

Lactobacillus sp. JN4 (AF157041)

83

  

Pseudomonas sp. CB11 (EU482915)

98

  

Uncultured bacterium clone FF_e08 (EU469596)

 
  1. Marker bands were used in all the gels.
  2. a Unique DGGE bands from each subsample.