From: Genetic diversity of Streptococcus suis isolates as determined by comparative genome hybridization
RD# | Range in P1/7* | Size (bp)* | Present in n/55 strains (parts present in n/55) | %GC$ | Predicted Function* |
---|---|---|---|---|---|
RD01 | SSU0101 - SSU0111 | 7.537 | 23 (49) | 34.1 | Integrase, replication initiation factor, hypothetical proteins |
RD02 | SSU0178 - SSU0182 | 5.501 | 47 | 40.8 | PTS IIB, transketolase |
RD03 | SSU0198 - SSU0209 | 14.234 | 37 (13) | 33.7 | PTS IIABC transporter, glucosamine-6-phosphate isomerase, pseudogene |
RD04 | SSU0300 - SSU0305 | 5.455 | 36 (17) | 43.0 | Dehydrogenase, flavin oxidoreductase, transcription regulator lipase |
RD05 | SSU0346 - SSU0350 | 7.680 | 29 | 38.8 | merR, hypothetical proteins |
RD06 | SSU0413 - SSU0418 | 8.624 | 29 (14) | 33.6 | Hypothetical proteins |
RD07 | SSU0423 - SSU0428 | 8.383 | 30 (11) | 39.3 | Signal peptidase, srtF |
RD08 | SSU0449 - SSU0453 | 2.475 | 52 | 36.0 | Signal peptidase, srtE |
RD09 | SSU0519 - SSU0556 | 27.705 | 30 (6) | 35.6 | cps-genes, transposases |
RD10 | SSU0592 - SSU0600 | 8.410 | 52 | 36.7 | Hypothetical proteins, D-alanine transport |
RD11 | SSU0640 - SSU0642 | 5.514 | 42 | 42.5 | Type III RM |
RD12 | SSU0651 - SSU0655 | 7.674 | 34 (5) | 38.8 | Type I RM |
RD13 | SSU0661 - SSU0670 | 10.283 | 50 | 40.1 | PTS IIABC, formate acetyltransferase, fructose-6-phaphate aldolase, glycerol dehydrogenase |
RD14 | SSU0673 - SSU0679 | 8.872 | 45 | 42.1 | Piryidine nucleotide-disulphide oxidoreductase, DNA-binding protein, glycerol kinase, alpha-glycreophophate oxidase, glycerol uptake facilitator, dioxygenase |
RD15 | SSU0684 - SSU0693 | 7.868 | 35 | 38.6 | Phosphatase, phosphomethylpyrimidine kinase, hydroxyethylthiazole kinase, thiamine-phosphate pyrophosphorylase, uridine phosphorylase, cobalt transport protein, ABC transporter |
RD16 | SSU0804 - SSU0815 | 11.036 | 20 | 30.6 | Plasmid replication protein, hypothetical proteins |
RD17 | SSU0833 - SSU0835 | 2.386 | 31 | 34.1 | Lantibiotic immunity |
RD18 | SSU0850 - SSU0852 | 2.345 | 50 | 40.9 | Pyridine nucleotide-disulphide oxidoreductase, hypothetical proteins |
RD19 | SSU0902 - SSU0904 | 2.169 | 52 | 36.4 | Hypothetical proteins |
RD20 | SSU0963 - SSU0968 | 2.769 | 54 | 43.2 | Acetyltransferase, transposases |
RD21 | SSU0998 - SSU1008 | 13.688 | 54 | 42.3 | Glycosyl hydrolase, UDP-N-acetylglucosamine 1-carboxyvinyltransferase, 2-deoxy-D-gluconate 3-dehydrogenase, mannonate dehydratase, urinate isomerase, 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, beta-glucuronidase, carbohydrate kinase, sugar transporter |
RD22 | SSU1047 - SSU1066 | 17.452 | 52 | 40.1 | Hyaluronidase, PTS IIABCD, aldolase, kinase, sugar-phosphate isomerase, gluconate 5-dehydrogenase, transposase |
RD23 | SSU1169 - SSU1172 | 4.850 | 53 (1) | 42.6 | ABC transporter |
RD24 | SSU1271 - SSU1274 | 6.695 | 36 (1) | 35.8 | Type I RM |
RD25 | SSU1285 - SSU1287 | 805 | 43 | 41.7 | Hypothetical proteins |
RD26 | SSU1308 - SSU1310 | 4.130 | 52 | 36.7 | PTS IIABC |
RD27 | SSU1330 - SSU1347 | 10.041 | 28 | 37.1 | Phage proteins, hypothetical proteins |
RD28 | SSU1369 - SSU1374 | 7.733 | 53 | 38.8 | Sucrose phosphorylase, ABC transporter |
RD29 | SSU1402 - SSU1407 | 5.018 | 29 (24) | 41.2 | Bacitracin export, transposase |
RD30 | SSU1470 - SSU1476 | 10.163 | 52 | 35.4 | Two-component regulatory system, serum opacity factor |
RD31 | SSU1588 - SSU1592 | 7.771 | 52 | 40.9 | Type I RM, integrase |
RD32 | SSU1702 - SSU1715 | 23.640 | 45 | 43.4 | Two-component regulatory system, tranpsoase, glucosaminidase, hypothetical proteins, alpha-1,2,-mannosidase, eno-beta-N-acetylglucusaminidase |
RD33 | SSU1722 - SSU1727 | 4.924 | 30 | 38.3 | Acetyltransferase, hypothetical proteins, PTS IIBC |
RD34 | SSU1763 - SSU1768 | 6.153 | 29 | 47.1 | Nicotinamide mononucleotide transporter, transcriptional regulator, hypothetical proteins |
RD35 | SSU1855 - SSU1862 | 8.479 | 52 | 39.9 | PTS IIABC, hypothetical proteins, beta-glucosidase, 6-phospho-beta-glucosidase |
RD36 | SSU1872 - SSU1875 | 1.918 | 36 | 35.4 | RevS, CAAX amino terminal protease |
RD37 | SSU1881 - SSU1890 | 13.184 | 36 | 38.5 | srtB, C, D |
RD38 | SSU1927 - SSU1931 | 8.444 | 44 | 41.6 | β-glucosidase, two-compent regulatory system |
RD39 | SSU1942 - SSU1944 | 461 | 42 | 40.5 | mutT/NUDIX hydrolase |