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Table 1 Differentially regulated proteins of X.dendrorhous in MM glucose.

From: Proteomic analysis of the carotenogenic yeast Xanthophyllomyces dendrorhous

   cNormalized average spot quantity dFold change
aSSP bDescription Lag Exponential Stationary E/L S/L
   Avg. SD Avg. SD Avg. SD   
  Cellular Processes: Transport and motor proteins         
6818 Putative coatomer subunit alpha 144 111 813 345 1195 155 5.64 8.30
8703 Myosin-associated protein 152 151 995 598 735 255 6.56 4.84
8711   623 441 3145 2255 2459 906 5.05 3.95
5719 Golgi transport protein 7637 435 2446 1101 7415 1660 -3.12 -1.03
5728   4330 676 1390 618 3494 1095 -3.12 -1.24
6703   9226 2086 4269 306 7877 3334 -2.16 -1.17
2712 SS1G_01912 13322 4086 3886 2574 5444 711 -3.43 -2.45
7403 KIP1 kinesin-related protein 1494 866 5246 2780 3349 528 3.51 2.24
7804 Vacuolar-sorting-associated protein 25 3952 977 11351 6299 3428 1137 3.57 5.03
  Environmental Information Processing: Signal Transduction         
3814 Serine/threonine-prot. phosphatase PP1-1 472 451 270 108 2273 1825 -1.75 4.81
3815   14950 1985 7701 6806 10797 2018 -5.54 1.66
3816   208 94 133 103 745 415 -1.57 3.57
5724 Nucleotide phosphodiesterase 356 91 966 339 607 196 2.72 1.71
0126 14-3-3. DNA damage checkpoint protein 636 515 98 102 2338 2264 -6.49 3.68
0127   261 327 236 252 3161 937 -1.11 12.09
0128   85 79 253 101 904 339 2.98 10.64
  Genetic Information Processing         
9206 Ribosomal_L15 19280 5898 6131 5697 9959 8398 -3.14 -1.94
7815 Mediator of RNA polymerase II 1436 1029 2487 788 3794 542 1.73 2.64
6707 Hypothetical protein. DNA helicase 1663 234 785 319 2342 1310 -2.12 1.25
6610 Replication factor C subunit 3 1663 234 785 319 2342 1310 -2.12 1.41
3228 G4P04 (Fragment) 12049 2891 7896 4292 2188 1579 -1.53 -5.51
4803 Calpain-like protease palB/RIM13 1155 494 1308 890 347 171 1.13 -3.33
   2072 391 2087 1350 1715 101 1.01 -1.21
7528 Serine/threonine protein kinase (Kin28) 1366 369 2405 840 3280 802 1.76 2.40
7515 Histone acetyltransferase, predicted 3162 819 10965 2273 9410 1514 3.47 2.98
7711 Cell division control protein 25, putative 957 73 2201 1398 2842 659 2.30 2.97
  Metabolism         
7407 UDP-xylose synthase 5850 468 6499 2421 12649 295 1.11 2.16
8507 ATP synthase subunit alpha 13682 2423 11233 8105 4099 3058 -1.22 -3.34
7801 Heat shock protein, putative 1059 268 4202 2317 2373 708 3.97 2.24
  Lipid and Carbohydrate Metabolism         
2523 Acetyl-CoA carboxylase 10538 888 5524 2209 10218 5489 -1.91 -1.03
2524   26474 7704 15933 13733 17308 4885 -1.66 -1.53
3516   38053 5148 12837 8209 26762 5654 -2.96 -1.42
7519 Phosphoglucomutase-1 1967 565 6358 1401 2562 632 3.23 1.30
2319 Acetyl-CoA synthetase 14327 8064 11303 10213 4218 576 -1.27 -3.40
4104 ATP-citrate synthase 18720 2582 14847 10388 11099 2402 -1.26 -1.69
4413 ATP-citrate lyase 9657 987 6925 7702 8736 2536 -1.39 -1.11
6604 Fatty acid synthase 1291 149 285 315 1978 483 -4.52 1.53
  Secondary Metabolite/ Carotenoid Biosynthesis         
4515 Phytoene/squalene synthetase 5412 2656 13551 3057 7789 1051 2.50 1.44
4609 Mevalonate kinase 425 96 283 243 1246 454 -1.50 2.93
3517 Phosphomevalonate kinase 1005 494 270 220 367 504 -3.72 -2.73
6308 Diphosphomevalonate decarboxylase 2146 1521 4628 2509 5598 1347 2.16 2.61
  Redox Metabolism         
4401 Hypothetical oxidoreductase 6305 1432 1034 1014 1432 561 -6.10 -4.40
3606 Putative protein Cu-oxidase 741 92 184 195 1198 691 -4.04 1.62
5202 SDR family 2593 668 342 91 3515 418 -7.59 1.36
5208 Alcohol dehydrogenase 2564 1239 1008 1032 1607 578 -2.54 -1.60
4713 Monooxygenase 3930 522 4267 1706 5044 500 1.09 1.28
5703   4713 612 6594 2637 8287 916 1.40 1.76
5315 Cytochrome P450 10876 4259 16346 15386 6649 4692 1.50 -1.64
7108 Mn SOD 12020 3850 18262 13048 11032 1547 1.52 -1.09
  Amino Acid Metabolism         
8604 Seryl-tRNA synthetase 783 87 2517 1567 3861 203 3.21 4.93
7209 Methionyl-tRNA formyltransferase 912 290 28686 4392 17584 6195 31.44 19.27
7210   4348 1880 15379 2474 9085 2322 3.54 2.09
7816 Kynurenine 3-monooxygenase 111 73 726 424 811 64 6.56 7.33
7817   114 119 1139 751 1367 206 10.02 12.03
7819   130 84 1625 1134 1797 821 12.50 13.82
6821 Aspartyl-tRNA synthetase 156 81 395 76 1532 796 2.54 9.84
6828   580 11 2001 1020 2199 706 3.45 3.79
5410 Probable acetylornithine aminotransferase 4766 986 1794 1531 2615 447 -2.66 -1.82
2517 Phenylalanyl-tRNA synthetase beta chain 3325 375 813 639 2104 1397 -4.09 -1.58
5409 Glutamate dehydrogenase 2194 1506 2738 930 6893 2363 1.25 3.14
  Unknown         
2709 Conserved hypothetical protein 5609 2745 1227 889 4692 657 -4.57 -1.20
2710   2584 1482 1157 1630 1465 1413 -2.23 -1.76
6603 Hypothetical protein 3640 575 1014 1091 2985 120 -3.59 -1.22
7306 Hypothetical protein 2652 601 795 253 3569 2539 -3.34 1.35
6110 YALI0D17292p 10346 2105 1204 1434 8343 763 -8.59 -1.24
3503 Predicted protein 2670 367 906 897 735 650 -2.95 -3.63
  1. a SSP numbers were assigned by PDQuest software analysis.
  2. b Identifications were obtained using the Swiss-Prot and KEGG Pathways databases and contigs of X. dendrorhous genomic DNA.
  3. c Data derived from PDQuest estimation.
  4. d Mean fold changes compared with the 24 h cultures. Bold values indicate p < 0.01, italic p < 0.02 and underlined values indicate p < 0.05. Avg., average; SD, standard deviation.