Table 1 Putative SO2426 gene targets containing the predicted SO2426-binding site
From: SO2426 is a positive regulator of siderophore expression in Shewanella oneidensisMR-1
| ORF | Functional Category/Gene Product | Motif | Strand | Distancea | E-valueb |
|---|---|---|---|---|---|
| Cellular processes | |||||
| SO2280 | bicyclomycin resistance protein | AACGCTCAGGCAAA | - | -241 | 2.06E-04 |
| Central intermediary metabolism | |||||
| 5-methylthioadenosine nucleosidase/S- | |||||
| SO3705 | adenosylhomocysteine nucleosidase, putative | GTCAGCCAGCAAAA | + | +21 | 4.73E-05 |
| Energy metabolism | |||||
| SO2743 | acetyl-coenzyme A synthetase (acs) | AAAAAAGAGCAAAA | - | -160 | 1.46E-05 |
| Hypothetical proteins | |||||
| SO1188 | conserved hypothetical protein | AAAACTCAGCAGAA | - | -113 | 2.08E-06 |
| SO1190 | conserved hypothetical protein | CTAAGGCAACAAAA | - | +12 | 2.38E-05 |
| SO1770 | glycerate kinase, putative | ACAACCCAGAAGAA | - | -177 | 2.61E-05 |
| SO3025 | conserved hypothetical protein | GCAAAACATCAAAA | + | -234 | 1.13E-04 |
| SO3062 | hypothetical protein | ATAAATCAGGAGAA | + | -5 | 7.64E-06 |
| SO4499 | hypothetical protein | CTGCAACAGGAGAA | + | -5 | 1.19E-05 |
| SO4504 | conserved hypothetical protein | ATGTCCCAGACAAA | + | -169 | 1.06E-04 |
| SO4719 | conserved hypothetical protein | ATGAACCACAAGAA | + | -199 | 9.88E-05 |
| Transport and binding proteins | |||||
| SO0139 | ferritin (ftn) | CAAAAGCAACAAAA | - | -63 | 2.08E-06 |
| SO1580 | TonB-dependent heme receptor | AAAAAGCAGAAAAA | - | -112 | 3.68E-06 |
| SO1771 | permease, GntP family | CTACAACAGCCAAA | + | -41 | 2.81E-06 |
| SO2045 | cation efflux family protein | CACCCTCAACAGAA | + | +11 | 5.98E-05 |
| SO3030 | siderophore biosynthesis protein (alcA) | CTGTAACAGCAAAT | + | -133 | 2.86E-05 |
| SO3032 | siderophore biosynthesis protein, putative | CCGGATCAGCAAAA | + | -284 | 1.46E-05 |
| SO3033 | ferric alcaligin siderophore receptor | ATCAAACAGCCAAA | + | -112 | 3.20E-06 |
| SO3063 | sodium:alanine symporter family protein | CAAAAACAACAGAA | + | -18 | 1.09E-06 |
| SO4150 | transporter, putative | AAAAAACTGCAGAA | + | +16 | 7.64E-06 |
| SO4516 | ferric vibriobactin receptor (viuA) | CAGTAGCAGAAGAA | + | -249 | 1.62E-05 |
| SO4743 | TonB-dependent receptor, putative | CAAAAACAACAAAT | - | -168 | 2.38E-05 |
| Signal transduction | |||||
| SO2426 | DNA-binding response regulator | CAATACCTGCCAAA | + | -88 | 5.12E-05 |