Table 1 Putative SO2426 gene targets containing the predicted SO2426-binding site
From: SO2426 is a positive regulator of siderophore expression in Shewanella oneidensisMR-1
ORF | Functional Category/Gene Product | Motif | Strand | Distancea | E-valueb |
|---|---|---|---|---|---|
| Â | Cellular processes | Â | Â | Â | Â |
SO2280 |    bicyclomycin resistance protein | AACGCTCAGGCAAA | - | -241 | 2.06E-04 |
| Â | Central intermediary metabolism | Â | Â | Â | Â |
|  |    5-methylthioadenosine nucleosidase/S- |  |  |  |  |
SO3705 |    adenosylhomocysteine nucleosidase, putative | GTCAGCCAGCAAAA | + | +21 | 4.73E-05 |
| Â | Energy metabolism | Â | Â | Â | Â |
SO2743 |    acetyl-coenzyme A synthetase (acs) | AAAAAAGAGCAAAA | - | -160 | 1.46E-05 |
| Â | Hypothetical proteins | Â | Â | Â | Â |
SO1188 |    conserved hypothetical protein | AAAACTCAGCAGAA | - | -113 | 2.08E-06 |
SO1190 |    conserved hypothetical protein | CTAAGGCAACAAAA | - | +12 | 2.38E-05 |
SO1770 |    glycerate kinase, putative | ACAACCCAGAAGAA | - | -177 | 2.61E-05 |
SO3025 |    conserved hypothetical protein | GCAAAACATCAAAA | + | -234 | 1.13E-04 |
SO3062 |    hypothetical protein | ATAAATCAGGAGAA | + | -5 | 7.64E-06 |
SO4499 |    hypothetical protein | CTGCAACAGGAGAA | + | -5 | 1.19E-05 |
SO4504 |    conserved hypothetical protein | ATGTCCCAGACAAA | + | -169 | 1.06E-04 |
SO4719 |    conserved hypothetical protein | ATGAACCACAAGAA | + | -199 | 9.88E-05 |
| Â | Transport and binding proteins | Â | Â | Â | Â |
SO0139 |    ferritin (ftn) | CAAAAGCAACAAAA | - | -63 | 2.08E-06 |
SO1580 |    TonB-dependent heme receptor | AAAAAGCAGAAAAA | - | -112 | 3.68E-06 |
SO1771 |    permease, GntP family | CTACAACAGCCAAA | + | -41 | 2.81E-06 |
SO2045 |    cation efflux family protein | CACCCTCAACAGAA | + | +11 | 5.98E-05 |
SO3030 |    siderophore biosynthesis protein (alcA) | CTGTAACAGCAAAT | + | -133 | 2.86E-05 |
SO3032 |    siderophore biosynthesis protein, putative | CCGGATCAGCAAAA | + | -284 | 1.46E-05 |
SO3033 |    ferric alcaligin siderophore receptor | ATCAAACAGCCAAA | + | -112 | 3.20E-06 |
SO3063 |    sodium:alanine symporter family protein | CAAAAACAACAGAA | + | -18 | 1.09E-06 |
SO4150 |    transporter, putative | AAAAAACTGCAGAA | + | +16 | 7.64E-06 |
SO4516 |    ferric vibriobactin receptor (viuA) | CAGTAGCAGAAGAA | + | -249 | 1.62E-05 |
SO4743 |    TonB-dependent receptor, putative | CAAAAACAACAAAT | - | -168 | 2.38E-05 |
| Â | Signal transduction | Â | Â | Â | Â |
SO2426 |    DNA-binding response regulator | CAATACCTGCCAAA | + | -88 | 5.12E-05 |