TY - JOUR AU - Raivio, T. L. AU - Silhavy, T. J. PY - 2001 DA - 2001// TI - Periplasmic stress and ECF sigma factors JO - Annu Rev Microbiol VL - 55 UR - https://doi.org/10.1146/annurev.micro.55.1.591 DO - 10.1146/annurev.micro.55.1.591 ID - Raivio2001 ER - TY - JOUR AU - West, A. H. AU - Stock, A. M. PY - 2001 DA - 2001// TI - Histidine kinases and response regulator proteins in two-component signaling systems JO - Trends Biochem Sci VL - 26 UR - https://doi.org/10.1016/S0968-0004(01)01852-7 DO - 10.1016/S0968-0004(01)01852-7 ID - West2001 ER - TY - JOUR AU - Ulrich, L. E. AU - Koonin, E. V. AU - Zhulin, I. B. PY - 2005 DA - 2005// TI - One-component systems dominate signal transduction in prokaryotes JO - Trends Microbiol VL - 13 UR - https://doi.org/10.1016/j.tim.2004.12.006 DO - 10.1016/j.tim.2004.12.006 ID - Ulrich2005 ER - TY - JOUR AU - Gueriri, I. AU - Cyncynatus, C. AU - Dubrac, S. AU - Arana, A. T. AU - Dussurget, O. AU - Msadek, T. PY - 2008 DA - 2008// TI - The DegU orphan response regulator of Listeria monocytogenes autorepresses its own synthesis and is required for bacterial motility, virulence and biofilm formation JO - Microbiology VL - 154 UR - https://doi.org/10.1099/mic.0.2008/017590-0 DO - 10.1099/mic.0.2008/017590-0 ID - Gueriri2008 ER - TY - JOUR AU - Delany, I. AU - Spohn, G. AU - Rappuoli, R. AU - Scarlato, V. PY - 2002 DA - 2002// TI - Growth phase-dependent regulation of target gene promoters for binding of the essential orphan response regulator HP1043 of Helicobacter pylori JO - J Bacteriol VL - 184 UR - https://doi.org/10.1128/JB.184.17.4800-4810.2002 DO - 10.1128/JB.184.17.4800-4810.2002 ID - Delany2002 ER - TY - JOUR AU - Hong, E. AU - Lee, H. M. AU - Ko, H. AU - Kim, D. U. AU - Jeon, B. Y. AU - Jung, J. AU - Shin, J. AU - Lee, S. A. AU - Kim, Y. AU - Jeon, Y. H. PY - 2007 DA - 2007// TI - Structure of an atypical orphan response regulator protein supports a new phosphorylation-independent regulatory mechanism JO - J Biol Chem VL - 282 UR - https://doi.org/10.1074/jbc.M609104200 DO - 10.1074/jbc.M609104200 ID - Hong2007 ER - TY - JOUR AU - Pan, X. AU - Ge, J. AU - Li, M. AU - Wu, B. AU - Wang, C. AU - Wang, J. AU - Feng, Y. AU - Yin, Z. AU - Zheng, F. AU - Cheng, G. PY - 2009 DA - 2009// TI - The orphan response regulator CovR: a globally negative modulator of virulence in Streptococcus suis serotype 2 JO - J Bacteriol VL - 191 UR - https://doi.org/10.1128/JB.01309-08 DO - 10.1128/JB.01309-08 ID - Pan2009 ER - TY - JOUR AU - Ulijasz, A. T. AU - Andes, D. R. AU - Glasner, J. D. AU - Weisblum, B. PY - 2004 DA - 2004// TI - Regulation of iron transport in Streptococcus pneumoniae by RitR, an orphan response regulator JO - J Bacteriol VL - 186 UR - https://doi.org/10.1128/JB.186.23.8123-8136.2004 DO - 10.1128/JB.186.23.8123-8136.2004 ID - Ulijasz2004 ER - TY - JOUR AU - Echave, P. AU - Tamarit, J. AU - Cabiscol, E. AU - Ros, J. PY - 2003 DA - 2003// TI - Novel antioxidant role of alcohol dehydrogenase E from Escherichia coli JO - J Biol Chem VL - 278 UR - https://doi.org/10.1074/jbc.M304351200 DO - 10.1074/jbc.M304351200 ID - Echave2003 ER - TY - JOUR AU - Gao, H. AU - Wang, X. AU - Yang, Z. K. AU - Palzkill, T. AU - Zhou, J. PY - 2008 DA - 2008// TI - Probing regulon of ArcA in Shewanella oneidensis MR-1 by integrated genomic analyses JO - BMC Genomics VL - 9 UR - https://doi.org/10.1186/1471-2164-9-42 DO - 10.1186/1471-2164-9-42 ID - Gao2008 ER - TY - JOUR AU - Andrews, S. C. AU - Robinson, A. K. AU - Rodriguez-Quinones, F. PY - 2003 DA - 2003// TI - Bacterial iron homeostasis JO - FEMS Microbiol Rev VL - 27 UR - https://doi.org/10.1016/S0168-6445(03)00055-X DO - 10.1016/S0168-6445(03)00055-X ID - Andrews2003 ER - TY - JOUR AU - Wan, X. F. AU - Verberkmoes, N. C. AU - McCue, L. A. AU - Stanek, D. AU - Connelly, H. AU - Hauser, L. J. AU - Wu, L. AU - Liu, X. AU - Yan, T. AU - Leaphart, A. PY - 2004 DA - 2004// TI - Transcriptomic and proteomic characterization of the Fur modulon in the metal-reducing bacterium Shewanella oneidensis JO - J Bacteriol VL - 186 UR - https://doi.org/10.1128/JB.186.24.8385-8400.2004 DO - 10.1128/JB.186.24.8385-8400.2004 ID - Wan2004 ER - TY - JOUR AU - Yang, Y. AU - Harris, D. P. AU - Luo, F. AU - Wu, L. AU - Parsons, A. B. AU - Palumbo, A. V. AU - Zhou, J. PY - 2008 DA - 2008// TI - Characterization of the Shewanella oneidensis Fur gene: roles in iron and acid tolerance response JO - BMC Genomics VL - 9 UR - https://doi.org/10.1186/1471-2164-9-S1-S11 DO - 10.1186/1471-2164-9-S1-S11 ID - Yang2008 ER - TY - JOUR AU - Yang, Y. AU - Harris, D. P. AU - Luo, F. AU - Xiong, W. AU - Joachimiak, M. AU - Wu, L. AU - Dehal, P. AU - Jacobsen, J. AU - Yang, Z. AU - Palumbo, A. V. PY - 2009 DA - 2009// TI - Snapshot of iron response in Shewanella oneidensis by gene network reconstruction JO - BMC Genomics VL - 10 UR - https://doi.org/10.1186/1471-2164-10-131 DO - 10.1186/1471-2164-10-131 ID - Yang2009 ER - TY - JOUR AU - Brown, S. D. AU - Thompson, M. R. AU - Verberkmoes, N. C. AU - Chourey, K. AU - Shah, M. AU - Zhou, J. AU - Hettich, R. L. AU - Thompson, D. K. PY - 2006 DA - 2006// TI - Molecular dynamics of the Shewanella oneidensis response to chromate stress JO - Mol Cell Proteomics VL - 5 UR - https://doi.org/10.1074/mcp.M500394-MCP200 DO - 10.1074/mcp.M500394-MCP200 ID - Brown2006 ER - TY - JOUR AU - Thompson, M. R. AU - VerBerkmoes, N. C. AU - Chourey, K. AU - Shah, M. AU - Thompson, D. K. AU - Hettich, R. L. PY - 2007 DA - 2007// TI - Dosage-dependent proteome response of Shewanella oneidensis MR-1 to acute chromate challenge JO - J Proteome Res VL - 6 UR - https://doi.org/10.1021/pr060502x DO - 10.1021/pr060502x ID - Thompson2007 ER - TY - JOUR AU - Henne, K. L. AU - Turse, J. E. AU - Nicora, C. D. AU - Lipton, M. S. AU - Tollaksen, S. L. AU - Lindberg, C. AU - Babnigg, G. AU - Giometti, C. S. AU - Nakatsu, C. H. AU - Thompson, D. K. AU - Konopka, A. E. PY - 2009 DA - 2009// TI - Global proteomic analysis of the chromate response in Arthrobacter sp. strain FB24 JO - J Proteome Res VL - 8 UR - https://doi.org/10.1021/pr800705f DO - 10.1021/pr800705f ID - Henne2009 ER - TY - JOUR AU - Bagchi, D. AU - Stohs, S. J. AU - Downs, B. W. AU - Bagchi, M. AU - Preuss, H. G. PY - 2002 DA - 2002// TI - Cytotoxicity and oxidative mechanisms of different forms of chromium JO - Toxicology VL - 180 UR - https://doi.org/10.1016/S0300-483X(02)00378-5 DO - 10.1016/S0300-483X(02)00378-5 ID - Bagchi2002 ER - TY - JOUR AU - Wang, C. C. AU - Newton, A. PY - 1969 DA - 1969// TI - Iron transport in Escherichia coli: relationship between chromium sensitivity and high iron requirement in mutants of Escherichia coli JO - J Bacteriol VL - 98 ID - Wang1969 ER - TY - JOUR AU - Chourey, K. AU - Thompson, M. R. AU - Morrell-Falvey, J. AU - Verberkmoes, N. C. AU - Brown, S. D. AU - Shah, M. AU - Zhou, J. AU - Doktycz, M. AU - Hettich, R. L. AU - Thompson, D. K. PY - 2006 DA - 2006// TI - Global molecular and morphological effects of 24-hour chromium(VI) exposure on Shewanella oneidensis MR-1 JO - Appl Environ Microbiol VL - 72 UR - https://doi.org/10.1128/AEM.00813-06 DO - 10.1128/AEM.00813-06 ID - Chourey2006 ER - TY - JOUR AU - Chourey, K. AU - Wei, W. AU - Wan, X. F. AU - Thompson, D. K. PY - 2008 DA - 2008// TI - Transcriptome analysis reveals response regulator SO2426-mediated gene expression in Shewanella oneidensis MR-1 under chromate challenge JO - BMC Genomics VL - 9 UR - https://doi.org/10.1186/1471-2164-9-395 DO - 10.1186/1471-2164-9-395 ID - Chourey2008 ER - TY - JOUR AU - Martinez-Hackert, E. AU - Stock, A. M. PY - 1997 DA - 1997// TI - Structural relationships in the OmpR family of winged-helix transcription factors JO - J Mol Biol VL - 269 UR - https://doi.org/10.1006/jmbi.1997.1065 DO - 10.1006/jmbi.1997.1065 ID - Martinez-Hackert1997 ER - TY - JOUR AU - Konstantinidis, K. T. AU - Serres, M. H. AU - Romine, M. F. AU - Rodrigues, J. L. AU - Auchtung, J. AU - McCue, L. A. AU - Lipton, M. S. AU - Obraztsova, A. AU - Giometti, C. S. AU - Nealson, K. H. PY - 2009 DA - 2009// TI - Comparative systems biology across an evolutionary gradient within the Shewanella genus JO - Proc Natl Acad Sci USA VL - 106 UR - https://doi.org/10.1073/pnas.0902000106 DO - 10.1073/pnas.0902000106 ID - Konstantinidis2009 ER - TY - JOUR AU - Hau, H. H. AU - Gralnick, J. A. PY - 2007 DA - 2007// TI - Ecology and biotechnology of the genus Shewanella JO - Annu Rev Microbiol VL - 61 UR - https://doi.org/10.1146/annurev.micro.61.080706.093257 DO - 10.1146/annurev.micro.61.080706.093257 ID - Hau2007 ER - TY - JOUR AU - Saltikov, C. W. AU - Cifuentes, A. AU - Venkateswaran, K. AU - Newman, D. K. PY - 2003 DA - 2003// TI - The ars detoxification system is advantageous but not required for As(V) respiration by the genetically tractable Shewanella species strain ANA-3 JO - Appl Environ Microbiol VL - 69 UR - https://doi.org/10.1128/AEM.69.5.2800-2809.2003 DO - 10.1128/AEM.69.5.2800-2809.2003 ID - Saltikov2003 ER - TY - JOUR AU - Aguilar-Barajas, E. AU - Paluscio, E. AU - Cervantes, C. AU - Rensing, C. PY - 2008 DA - 2008// TI - Expression of chromate resistance genes from Shewanella sp. strain ANA-3 in Escherichia coli JO - FEMS Microbiol Lett VL - 285 UR - https://doi.org/10.1111/j.1574-6968.2008.01220.x DO - 10.1111/j.1574-6968.2008.01220.x ID - Aguilar-Barajas2008 ER - TY - JOUR AU - Bencheikh-Latmani, R. AU - Obraztsova, A. AU - Mackey, M. R. AU - Ellisman, M. H. AU - Tebo, B. M. PY - 2007 DA - 2007// TI - Toxicity of Cr(lll) to Shewanella sp. strain MR-4 during Cr(VI) reduction JO - Environ Sci Technol VL - 41 UR - https://doi.org/10.1021/es0622655 DO - 10.1021/es0622655 ID - Bencheikh-Latmani2007 ER - TY - STD TI - Karpinets TV, Obraztsova AY, Wang Y, Schmoyer DD, Kora GH, Park BH, Serres MH, Romine MF, Land ML, Kothe TB, et al: Conserved synteny at the protein family level reveals genes underlying Shewanella species' cold tolerance and predicts their novel phenotypes. Funct Integr Genomics. 10: 97-110. ID - ref28 ER - TY - JOUR AU - Fredrickson, J. K. AU - Romine, M. F. AU - Beliaev, A. S. AU - Auchtung, J. M. AU - Driscoll, M. E. AU - Gardner, T. S. AU - Nealson, K. H. AU - Osterman, A. L. AU - Pinchuk, G. AU - Reed, J. L. PY - 2008 DA - 2008// TI - Towards environmental systems biology of Shewanella JO - Nat Rev Microbiol VL - 6 UR - https://doi.org/10.1038/nrmicro1947 DO - 10.1038/nrmicro1947 ID - Fredrickson2008 ER - TY - JOUR AU - Bailey, T. L. AU - Elkan, C. PY - 1994 DA - 1994// TI - Fitting a mixture model by expectation maximization to discover motifs in biopolymers JO - Proc Int Conf Intell Syst Mol Biol VL - 2 ID - Bailey1994 ER - TY - JOUR AU - Thijs, G. AU - Marchal, K. AU - Lescot, M. AU - Rombauts, S. AU - De Moor, B. AU - Rouze, P. AU - Moreau, Y. PY - 2002 DA - 2002// TI - A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes JO - J Comput Biol VL - 9 UR - https://doi.org/10.1089/10665270252935566 DO - 10.1089/10665270252935566 ID - Thijs2002 ER - TY - JOUR AU - Thompson, W. AU - Rouchka, E. C. AU - Lawrence, C. E. PY - 2003 DA - 2003// TI - Gibbs Recursive Sampler: finding transcription factor binding sites JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg608 DO - 10.1093/nar/gkg608 ID - Thompson2003 ER - TY - JOUR AU - De Wulf, P. AU - McGuire, A. M. AU - Liu, X. AU - Lin, E. C. PY - 2002 DA - 2002// TI - Genome-wide profiling of promoter recognition by the two-component response regulator CpxR-P in Escherichia coli JO - J Biol Chem VL - 277 UR - https://doi.org/10.1074/jbc.M203487200 DO - 10.1074/jbc.M203487200 ID - De Wulf2002 ER - TY - JOUR AU - Pogliano, J. AU - Lynch, A. S. AU - Belin, D. AU - Lin, E. C. AU - Beckwith, J. PY - 1997 DA - 1997// TI - Regulation of Escherichia coli cell envelope proteins involved in protein folding and degradation by the Cpx two-component system JO - Genes Dev VL - 11 UR - https://doi.org/10.1101/gad.11.9.1169 DO - 10.1101/gad.11.9.1169 ID - Pogliano1997 ER - TY - JOUR AU - Danese, P. N. AU - Snyder, W. B. AU - Cosma, C. L. AU - Davis, L. J. AU - Silhavy, T. J. PY - 1995 DA - 1995// TI - The Cpx two-component signal transduction pathway of Escherichia coli regulates transcription of the gene specifying the stress-inducible periplasmic protease, DegP JO - Genes Dev VL - 9 UR - https://doi.org/10.1101/gad.9.4.387 DO - 10.1101/gad.9.4.387 ID - Danese1995 ER - TY - JOUR AU - Ruiz, N. AU - Silhavy, T. J. PY - 2005 DA - 2005// TI - Sensing external stress: watchdogs of the Escherichia coli cell envelope JO - Curr Opin Microbiol VL - 8 UR - https://doi.org/10.1016/j.mib.2005.02.013 DO - 10.1016/j.mib.2005.02.013 ID - Ruiz2005 ER - TY - JOUR AU - Batchelor, E. AU - Walthers, D. AU - Kenney, L. J. AU - Goulian, M. PY - 2005 DA - 2005// TI - The Escherichia coli CpxA-CpxR envelope stress response system regulates expression of the porins ompF and ompC JO - J Bacteriol VL - 187 UR - https://doi.org/10.1128/JB.187.16.5723-5731.2005 DO - 10.1128/JB.187.16.5723-5731.2005 ID - Batchelor2005 ER - TY - JOUR AU - De Wulf, P. AU - Kwon, O. AU - Lin, E. C. PY - 1999 DA - 1999// TI - The CpxRA signal transduction system of Escherichia coli: growth-related autoactivation and control of unanticipated target operons JO - J Bacteriol VL - 181 ID - De Wulf1999 ER - TY - JOUR AU - Danese, P. N. AU - Silhavy, T. J. PY - 1998 DA - 1998// TI - CpxP, a stress-combative member of the Cpx regulon JO - J Bacteriol VL - 180 ID - Danese1998 ER - TY - JOUR AU - Yamamoto, K. AU - Ishihama, A. PY - 2005 DA - 2005// TI - Transcriptional response of Escherichia coli to external copper JO - Mol Microbiol VL - 56 UR - https://doi.org/10.1111/j.1365-2958.2005.04532.x DO - 10.1111/j.1365-2958.2005.04532.x ID - Yamamoto2005 ER - TY - JOUR AU - Chourey, K. AU - Thompson, M. R. AU - Shah, M. AU - Zhang, B. AU - Verberkmoes, N. C. AU - Thompson, D. K. AU - Hettich, R. L. PY - 2009 DA - 2009// TI - Comparative temporal proteomics of a response regulator (SO2426)-deficient strain and wild-type Shewanella oneidensis MR-1 during chromate transformation JO - J Proteome Res VL - 8 UR - https://doi.org/10.1021/pr800776d DO - 10.1021/pr800776d ID - Chourey2009 ER - TY - JOUR AU - Brown, S. D. AU - Martin, M. AU - Deshpande, S. AU - Seal, S. AU - Huang, K. AU - Alm, E. AU - Yang, Y. AU - Wu, L. AU - Yan, T. AU - Liu, X. PY - 2006 DA - 2006// TI - Cellular response of Shewanella oneidensis to strontium stress JO - Appl Environ Microbiol VL - 72 UR - https://doi.org/10.1128/AEM.72.1.890-900.2006 DO - 10.1128/AEM.72.1.890-900.2006 ID - Brown2006 ER - TY - JOUR AU - Fennessey, C. M. AU - Jones, M. E. AU - Taillefert, M. AU - DiChristina, T. J. PY - 2010 DA - 2010// TI - Siderophores are not involved in Fe(III) solubilization during anaerobic Fe(III) respiration by Shewanella oneidensis MR-1 JO - Appl Environ Microbiol VL - 76 UR - https://doi.org/10.1128/AEM.03066-09 DO - 10.1128/AEM.03066-09 ID - Fennessey2010 ER - TY - JOUR AU - Macomber, L. AU - Imlay, J. A. PY - 2009 DA - 2009// TI - The iron-sulfur clusters of dehydratases are primary intracellular targets of copper toxicity JO - Proc Natl Acad Sci USA VL - 106 UR - https://doi.org/10.1073/pnas.0812808106 DO - 10.1073/pnas.0812808106 ID - Macomber2009 ER - TY - JOUR AU - Guedon, E. AU - Moore, C. M. AU - Que, Q. AU - Wang, T. AU - Ye, R. W. AU - Helmann, J. D. PY - 2003 DA - 2003// TI - The global transcriptional response of Bacillus subtilis to manganese involves the MntR, Fur, TnrA and sigmaB regulons JO - Mol Microbiol VL - 49 UR - https://doi.org/10.1046/j.1365-2958.2003.03648.x DO - 10.1046/j.1365-2958.2003.03648.x ID - Guedon2003 ER - TY - JOUR AU - Myers, C. R. AU - Myers, J. M. PY - 1998 DA - 1998// TI - Iron stimulates the rate of reduction of hexavalent chromium by human microsomes JO - Carcinogenesis VL - 19 UR - https://doi.org/10.1093/carcin/19.6.1029 DO - 10.1093/carcin/19.6.1029 ID - Myers1998 ER - TY - JOUR AU - Myers, C. R. AU - Myers, J. M. AU - Carstens, B. P. AU - Antholine, W. E. PY - 2000 DA - 2000// TI - Reduction Of Chromium(VI) To Chromium(V) By Human Microsomal Enzymes: Effects Of Iron and Quinones JO - Toxic Substance Mechanisms VL - 19 UR - https://doi.org/10.1080/10769180051125734 DO - 10.1080/10769180051125734 ID - Myers2000 ER - TY - JOUR AU - Luo, H. AU - Lu, Y. AU - Shi, X. AU - Mao, Y. AU - Dalal, N. S. PY - 1996 DA - 1996// TI - Chromium (IV)-mediated fenton-like reaction causes DNA damage: implication to genotoxicity of chromate JO - Ann Clin Lab Sci VL - 26 ID - Luo1996 ER - TY - JOUR AU - Seo, J. AU - Gordish-Dressman, H. AU - Hoffman, E. P. PY - 2006 DA - 2006// TI - An interactive power analysis tool for microarray hypothesis testing and generation JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btk052 DO - 10.1093/bioinformatics/btk052 ID - Seo2006 ER - TY - JOUR AU - Bailey, T. L. AU - Gribskov, M. PY - 1998 DA - 1998// TI - Combining evidence using p-values: application to sequence homology searches JO - Bioinformatics VL - 14 UR - https://doi.org/10.1093/bioinformatics/14.1.48 DO - 10.1093/bioinformatics/14.1.48 ID - Bailey1998 ER - TY - JOUR AU - Schneider, T. D. AU - Stephens, R. M. PY - 1990 DA - 1990// TI - Sequence logos: a new way to display consensus sequences JO - Nucleic Acids Res VL - 18 UR - https://doi.org/10.1093/nar/18.20.6097 DO - 10.1093/nar/18.20.6097 ID - Schneider1990 ER - TY - JOUR AU - Thompson, J. D. AU - Higgins, D. G. AU - Gibson, T. J. PY - 1994 DA - 1994// TI - CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice JO - Nucleic Acids Res VL - 22 UR - https://doi.org/10.1093/nar/22.22.4673 DO - 10.1093/nar/22.22.4673 ID - Thompson1994 ER - TY - JOUR AU - Stock, A. M. AU - Robinson, V. L. AU - Goudreau, P. N. PY - 2000 DA - 2000// TI - Two-component signal transduction JO - Annu Rev Biochem VL - 69 UR - https://doi.org/10.1146/annurev.biochem.69.1.183 DO - 10.1146/annurev.biochem.69.1.183 ID - Stock2000 ER - TY - BOOK AU - Swofford, D. L. PY - 1998 DA - 1998// TI - PAUP*: Phylogenic analysis using Parsimony ID - Swofford1998 ER - TY - JOUR AU - Schwyn, B. AU - Neilands, J. B. PY - 1987 DA - 1987// TI - Universal chemical assay for the detection and determination of siderophores JO - Anal Biochem VL - 160 UR - https://doi.org/10.1016/0003-2697(87)90612-9 DO - 10.1016/0003-2697(87)90612-9 ID - Schwyn1987 ER -