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Table 1 Homologies of the transcript derived fragments (TDFs) to known sequences in the databases.

From: Identification of genes differentially expressed during interaction of Mexican lime tree infected with "Candidatus Phytoplasma aurantifolia"

TDF Length
(bp)
Accession number I/R Annotation (plant, accession number) E-value
Stress response/defense    
Gh16122 444 GT222039 I Proline-rich protein (Cladrastis kentukea, AAG15241.1) 1e-12
Gh11114 158 GT222037 R Modifier of snc1 (Ricinus communis, XP_002522998.1) 6e-04
Gh11112 157 GT222036 R Modifier of snc1 (Ricinus communis, XP_002522998.1) 6e-4
Gh921 191 GT222045 R Autophagy protein 5 (Glycine max, AM087008.1) 3e-19
Gh8221.1 198 GT222040 R Autophagy protein 5 [Glycine max, AM087008.1) 5e-08
Gh8221.2 190 GT222035 R Autophagy protei n (Glycine max, AM087008.1) 4e-19
Gh821 191 GT222047 R Autophagy protein 5 (Glycine ma x AM087008.1) 1e-29
Gh542 316 GT222056 I hypothetical protein with lysine domain (Medicago sativa, XP_002278178.1) 3e-22
Gh7111 69 GT222032 I Serine-rich protein-related, Cichorium intybus, TA1423_13427 7e-51
Gh16121 162 GT222038 I Serine-rich protein-related, Cichorium intybus, TA1423_13427 1e-49
Cell Metabolism    
Gh1574 526 GT222018 I Phosphatidyl glycerol specific phospholipase C-like (Sweet orange, EY651478.1) 1e-40
Gh511 113 GT222066 R L-asparaginase (Ricinus communis, ref-XM_002510114.1) 5e-06
Gh7123 263 GT222042 R Glycerophosphoryl diester phosphodiesterase (Ricinus communis, XP_002512887.1) 4e-27
Gh532 181 GT222058 R Retroelement pol polyprotein-like (Arabidopsis thaliana , BAB10790) 1e-14
Protein synthesis/destination    
Gh1633 416 GT222024 I 50 S ribosomal protein L15 (Ricinus communis, XP_002531621.1) 2e-19
Gh1631 416 GT222023 R 50 S ribosomal protein L15 (Ricinus communis, XP_002531621.1) 5e-18
Gh553-2 323 GT222065 R Ubiquitin-protein ligase (Vitis vinifera, XM_002305323.1) 4e-09
Gh553-1 181 GT222064 R Ubiquitin-protein ligase (Vitis vinifera, XM_002305323.1 1e-11
Signal transduction Protein    
Gh1822 161 GT222030 R Transducin family protein (Arabidopsis thaliana, NM_180281.2) 5e-15
Gh1821 160 GT222029 R Transducin family protein (Arabidopsis thaliana, NM_180281.2) 4e-16
Gh324 241 GT222061 I Serine/threonine-protein kinase (Ricinus communis, XM_002531749.1) 3e-15
Transporter     
Gh1572 380 GT222017 I Similar to Importin β 3 (Citrus clementina, DY277746) 2e-13
Gh1521 402 GT222015 I Similar to Importin β 3 (Citrus clementina, DY277746) 5e-14
Transcription     
Gh1591 722 GT222019 R RNA polymerase beta' gene, partial cds; chloroplast. (Citrus sinensis, YP_740466.1) 2e-139
Cytoskeleton    
Gh1811 148 GT222028 R Formin (Ricinus communis, XP_002532961.1) 2e-04
Unknown function     
Gh7101 108 GT222044 R Root salinity induced TDF (Spartina alterniflora, DR010701.1) 3e-05
Gh1511 123 GT222014 R Poncirus trifoliata Roots with Iron Deficiency, CX640377.1) 2e-06
Gh521 195 GT222059 R subtracted infection mimic Phytophthora infestans cDNA (CV945240.1) 4e-121
Gh1623 119 GT222021 R Leaf infected with Xylella fastidiosa (Sweet orange, EY666062.1) 3e-09
Gh821 191 GT222047 R Development (Citrus sinensis cDNA, EY722243.1) 1e-29
Gh1661 203 GT222025 R Phloem Citrus sinensis cDNA clone (Citrus sinensis, DR910976.1) 2e-74*
Gh1624 589 GT222022 R Mexican lime leaf, greenhouse plant, EY854330.1 8e-08
Gh721 110 GT222054 R root salinity induced TDF (Spartina alterniflora, DR010701.1) 3e-09
Gh541 308 GT222057 R Plant transcript (Citrus sinensis, TA16449_2711) 2e-50
Gh543 314 GT222055 I Slow drought stressed root cDNA library (Cicer arietinum, GR410097.1) 6e-122
Gh734 36 GT222052 R Slow drought stressed root cDNA library (Cicer arietinum, GR410033.1) 6e-122
  1. TDFs were cloned and sequenced from one health (R; repressed) or infected (I; induced) plant.