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Table 1 In silico analysis of the common genes detected by CGH in the reference microorganisms

From: Analysis of the genome content of Lactococcus garvieae by genomic interspecies microarray hybridization

CGH positive gene IDa

BLAT80b

BLAT70b, c

% Identity in BLASTd

atpD/SP1508

++

  

dnaG/SP1072

-

-

66%

dnaJ/SP0519

+

  

dnaK/SP0517

++

  

enoA/SP1128

++

  

fbaA/SP0605

++

  

ftsZ/SP1666

++

  

fusA/SP0273

++

  

gapB/SP2012

++

  

gltX/SP2069

-

++

 

ldh/SP1220

++

  

lepA/SP1200

-

++

 

leuS/SP0254

++

  

lysS/SP0713

-

++

 

msmk/SP1580

++

  

murA1/SP1081

-

+

 

pepC/SP0281

+

  

pfk/SP0896

-

+

 

pgiA/SP2070

+

  

pgk/SP0499

++

  

pmg/SP1655

++

  

ptnAB/SP0284

+

  

ptnD/SP0282

-

+

 

ptsI/SP1176

-

++

 

purA/SP0019

-

-

76%

pyk/SP0897

++

  

rplA/SP0631

++

  

rplB/SP0212

++

  

rplC/SP0209

++

  

rplF/SP0225

+

  

rplJ/SP1355

+

  

rplK/SP0630

++

  

rplL/SP1354

++

  

rplM/SP0294

++

  

rplN/SP0219

++

  

rplO/SP0229

++

  

rplQ/SP0237

+

  

rplS/SP1293

++

  

rplV/SP0214

+

  

rpmI/SP0960

+

  

rpmJ/SP0233

++

  

rpoB/SP1961

-

+

 

rpoC/SP1960

+

++

 

rpoD/SP1073

++

  

rpsA/SP0862

-

+

 

rpsB/SP2215

-

++

 

rpsC/SP0215

++

  

rpsD/SP0085

++

  

rpsE/SP0227

++

  

rpsG/SP0272

++

  

rpsJ/SP0208

++

  

rpsK/SP0235

++

  

rpsL/SP0271

++

  

rpsM/SP0234

+

  

rpsP/SP0775

+

  

rpsS/SP0213

+

  

topA/SP1263

-

+

 

tuf/SP1489

++

  

typA/SP0681

++

  

upp/SP0745

-

-

77%

ychH/SP2097

+

  

yciA/SP2096

-

-

68%

yjiF/SP1565

-

+

 

yjkI/SP2209

-

+

 

yyaL/SP0004

++

  
  1. a Reference organisms gene ID: Lactococcus lactis subsp. lactis IL1403/Streptococcus pneumoniae TIGR4
  2. b ++ Genes detected in both alignments, L. lactis subsp. lactis IL1403 array probes vs S. pneumoniae TIGR4 genome, and S. pneumoniae TIGR4 array probes vs L. lactis subsp. lactis IL1403 genome; + positive in one of the two cases.
  3. c Only the results for the negative genes in BLAT80 are shown.
  4. d Only the results for the negative genes in both BLAT80 and BLAT70 are shown.