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Table 2 Summary of Gene Ontology categories of overrepresented proteins whose expressions decrease during polyP deficiency in Pseudomonas sp. B4.

From: New structural and functional defects in polyphosphate deficient bacteria: A cellular and proteomic study

GO Term Annotation Spot Protein Name
IPR
NCBI Accession Theo.
Mr (kDa)/PI
Exp.
Mr (kDa)/PI
Species/Coverage Mascot Score
Biological Process
Regulation of transcription termination
GO:0031554
19 e, l Transcription termination factor NusA
IPR010213
gi: 146308624 54.6/4.52 70/5.0 Pseudomonas mendocina ymp/16% 508
Transport
GO:0006810
20 st, a ABC-type Fe3+ transport system periplasmic component-like
IPR011587
gi: 146306364 38.1/5.27 38/5.3 Pseudomonas mendocina ymp/50% 627
  21 st, a TRAP transporter solute receptor, TAXI family
IPR011852
gi: 146309574 33.3/5.74 35/6 Pseudomonas mendocina ymp/26% 808
  22 st, l Extracellular solute-binding protein, family 3
IPR001638
gi: 146309284 27.6/4.79 27/5 Pseudomonas mendocina ymp/66% 545
  23 st, a Outer membrane porin
IPR005318
gi: 146309320 46.6/6.03 45/5.2 Pseudomonas mendocina ymp/22% 411
  24 st, a TRAP dicarboxylate transporter, DctP subunit
IPR004682
gi: 146307449 37.6/7.04 35/7.5 Pseudomonas mendocina ymp/30% 292
  25 st, a Extracellular solute-binding protein, family 1
IPR006059
gi: 146307075 64.8/4.98 60/5 Pseudomonas mendocina ymp/44% 1080
  26 st, a Extracellular solute-binding protein, family 5
IPR000914
gi: 146305880 59.3/5.72 55/5.3 Pseudomonas mendocina ymp/16% 354
Polyamine transport
GO:0015846
27 st, a Transportador de putrescina ABC
IPR005893
gi: 70730588 42/6.67 40/5.4 Pseudomonas fluorescens Pf-5/14% 122
Transport
GO:0006810
28
e/l, st/a
Extracellular ligand-binding receptor
IPR001828
gi: 146306419 39.4/5.12 40/5.3 Pseudomonas mendocina ymp/20% 585
Amino acid metabolic process
GO:0006520
29 st, a Glu/Leu/Phe/Val dehydrogenase
IPR006097
gi: 146307897 37.1/5.85 40/7.5 Pseudomonas mendocina ymp/21% 366
Ciliary or flagellar motility
GO:0001539
30 st, l Flagellin domain
IPR001492
gi: 146307857 49.9/5.04 50/5 Pseudomonas mendocina ymp/6% 280
Molecular function
Hydrolase activity
GO:0016787
31 st, a Dienelactone hydrolase
IPR002925
gi: 146307513 27.8/5.45 30/5.3 Pseudomonas mendocina ymp/24% 411
Unknown function 32 st, a Protein of unknown function DUF1329 gi: 146308674 51.4/8.3 50/7.8 Pseudomonas mendocina ymp/50% 1200
  33 st, a Protein of unknown function DUF1302 gi: 77457132 64.1/5.15 65/4.9 Pseudomonas fluorescens PfO/13% 340
  1. Conditions and abbreviations are the same as those in Table1.