Table 2 Summary of Gene Ontology categories of overrepresented proteins whose expressions decrease during polyP deficiency in Pseudomonas sp. B4.
GO Term Annotation | Spot | Protein Name IPR | NCBI Accession | Theo. Mr (kDa)/PI | Exp. Mr (kDa)/PI | Species/Coverage | Mascot Score |
|---|---|---|---|---|---|---|---|
Biological Process | |||||||
Regulation of transcription termination GO:0031554 | 19 e, l | Transcription termination factor NusA IPR010213 | gi: 146308624 | 54.6/4.52 | 70/5.0 | Pseudomonas mendocina ymp/16% | 508 |
Transport GO:0006810 | 20 st, a | ABC-type Fe3+ transport system periplasmic component-like IPR011587 | gi: 146306364 | 38.1/5.27 | 38/5.3 | Pseudomonas mendocina ymp/50% | 627 |
21 st, a | TRAP transporter solute receptor, TAXI family IPR011852 | gi: 146309574 | 33.3/5.74 | 35/6 | Pseudomonas mendocina ymp/26% | 808 | |
22 st, l | Extracellular solute-binding protein, family 3 IPR001638 | gi: 146309284 | 27.6/4.79 | 27/5 | Pseudomonas mendocina ymp/66% | 545 | |
23 st, a | Outer membrane porin IPR005318 | gi: 146309320 | 46.6/6.03 | 45/5.2 | Pseudomonas mendocina ymp/22% | 411 | |
24 st, a | TRAP dicarboxylate transporter, DctP subunit IPR004682 | gi: 146307449 | 37.6/7.04 | 35/7.5 | Pseudomonas mendocina ymp/30% | 292 | |
25 st, a | Extracellular solute-binding protein, family 1 IPR006059 | gi: 146307075 | 64.8/4.98 | 60/5 | Pseudomonas mendocina ymp/44% | 1080 | |
26 st, a | Extracellular solute-binding protein, family 5 IPR000914 | gi: 146305880 | 59.3/5.72 | 55/5.3 | Pseudomonas mendocina ymp/16% | 354 | |
Polyamine transport GO:0015846 | 27 st, a | Transportador de putrescina ABC IPR005893 | gi: 70730588 | 42/6.67 | 40/5.4 | Pseudomonas fluorescens Pf-5/14% | 122 |
Transport GO:0006810 | 28 e/l, st/a | Extracellular ligand-binding receptor IPR001828 | gi: 146306419 | 39.4/5.12 | 40/5.3 | Pseudomonas mendocina ymp/20% | 585 |
Amino acid metabolic process GO:0006520 | 29 st, a | Glu/Leu/Phe/Val dehydrogenase IPR006097 | gi: 146307897 | 37.1/5.85 | 40/7.5 | Pseudomonas mendocina ymp/21% | 366 |
Ciliary or flagellar motility GO:0001539 | 30 st, l | Flagellin domain IPR001492 | gi: 146307857 | 49.9/5.04 | 50/5 | Pseudomonas mendocina ymp/6% | 280 |
Molecular function | |||||||
Hydrolase activity GO:0016787 | 31 st, a | Dienelactone hydrolase IPR002925 | gi: 146307513 | 27.8/5.45 | 30/5.3 | Pseudomonas mendocina ymp/24% | 411 |
Unknown function | 32 st, a | Protein of unknown function DUF1329 | gi: 146308674 | 51.4/8.3 | 50/7.8 | Pseudomonas mendocina ymp/50% | 1200 |
33 st, a | Protein of unknown function DUF1302 | gi: 77457132 | 64.1/5.15 | 65/4.9 | Pseudomonas fluorescens PfO/13% | 340 | |