Frequency and diversity of small cryptic plasmids in the genus Rahnella

Rozhon, Wilfried; Petutschnig, Elena; Khan, Mamoona; Summers, David K; Poppenberger, Brigitte

doi:10.1186/1471-2180-10-56

BMC Microbiology

Table 1 Strains used in this study

From: Frequency and diversity of small cryptic plasmids in the genus Rahnella

Strain^a	Genomic G+C content^b	Plasmid	Source	Year of isolation	Geographic region	Reference
DSM 4594^Tc	51.7 ± 0.5	pHW4594	Water	Before 1976	France	[60]
DSM 30076	51.4 ± 0.4	pHW30076	Chicken	1984 - 1988	Not given	[8]
DSM 30078		-	Minced meat	1984 - 1988	Not given	[8]
CCUG 21213^d		-	Human burn	1984 - 1988	USA	[8]
CCUG 48021^e		-	Snail, intestinal content	1984 - 1988	Germany	[8]
CCUG 48023^f		-	Human blood	1984 - 1988	Germany	[8]
WMR15	51.9 ± 0.9^g	pHW15	Pear, fruit	2000	Austria	[6]
WMR39		-	Carrot, root	2002	Austria	This study
WMR41		-	Carrot, root	2002	Austria	This study
WMR42	51.5 ± 0.2	pHW42	Carrot, root	2002	Spain	This study
WMR52		-	Carrot, root	2002	Austria	This study
WMR58	51.8 ± 0.7^g	-	Carrot, root	2002	Austria	[6]
WMR59		-	Leek, root	2002	Austria	This study
WMR60		-	Leek, root	2002	Austria	This study
WMR65		-	Spring onion, root	2002	Austria	This study
WMR66	51.8 ± 0.6	pHW66	Spring onion, root	2002	Austria	This study
WMR67		-	Celery, root	2002	Austria	This study
WMR70		-	Celery, root	2002	Austria	This study
WMR75		-	Sugar beet, root	2002	Austria, Lower Austria	This study
WMR76		-	Sugar beet, root	2002	Austria, Lower Austria	This study
WMR77		-	Yellow carrot, root	2002	Austria	This study
WMR79		-	Yellow carrot, root	2002	Austria	This study
WMR81		-	Yellow carrot, root	2002	Austria	This study
WMR82		-	Parsley, root	2002	Austria	This study
WMR83		-	Parsley, root	2002	Austria	This study
WMR84		-	Beetroot, root	2002	Austria	This study
WMR86		-	Beetroot, root	2002	Austria	This study
WMR87		-	Horseradish, root	2002	Austria	This study
WMR88		-	Horseradish, root	2002	Austria	This study
WMR93		-	Radish, root	2002	Austria	This study
WMR94		-	Carrot, root	2002	Spain, Gran Canaria	This study
WMR95		-	Carrot, root	2002	Spain, Gran Canaria	This study
WMR97		-	Carrot, root	2002	Spain, Gran Canaria	This study
WMR98		-	Carrot, root	2002	Spain, Gran Canaria	This study
WMR100		-	Celery, root	2003	Germany	This study
WMR102		-	Carrot, root	2003	Germany	This study
WMR104	52.2 ± 0.3	pHW104	Carrot, root	2003	Germany	This study
WMR105		-	Carrot, root	2003	Germany	This study
WMR106		-	Carrot, root	2003	Italy	This study
WMR107		-	Carrot, root	2003	Italy	This study
WMR108		-	Carrot, root	2003	Italy	This study
WMR109		-	Potato, tuber	2003	Egypt	This study
WMR113		-	Leek, root	2003	Belgium	This study
WMR114	51.3 ± 0.2	pHW114A+B	Leek, root	2003	Belgium	This study
WMR120	52.6 ± 0.5	pHW120	Carrot, root	2005	Spain, Tenerife	This study
WMR121	52.5 ± 0.5	pHW121	Carrot, root	2005	Spain, Tenerife	This study
WMR126	52.2 ± 0.1	pHW126	Carrot, root	2006	Albania	This study
WMR128		-	Carrot, root	2006	Croatia, Dubrovnik	This study
WMR138		-	Carrot, root	2006	Spain, La Palma	This study
WMR140		-	Carrot, root	2006	Spain, La Palma	This study
WMR141		-	Carrot, root	2007	Portugal, Madeira	This study
WMR143		-	Carrot, root	2007	Portugal, Madeira	This study
WMR144		-	Carrot, root	2007	Portugal, Madeira	This study

^a DSM strains were obtained from the Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Germany. CCUG strains were obtained from the Culture Collection, University Göteborg, Sweden.
^b Means and standard deviations of the mol% G+C contents were calculated from at least three independent measurements.
^c Synonyms: CCUG 14185^T, ATCC 33071^T, CUETM 77-115^T, MCCM 01700^T, CDC 1327-79^T.
^d Synonyms: CDC 658-79, MCCM 01948.
^e Synonyms: SM S7/1-576, CDC 4402-96.
^f Synonyms: SM Bonn 7, CDC 4418-96.
^g Taken from [6].

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ISSN: 1471-2180

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