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Table 1 General features of T. rubrum EST libraries

From: Transcriptional profiling reveals the expression of novel genes in response to various stimuli in the human dermatophyte Trichophyton rubrum

Library GenBank accession No. No. of raw ESTs No. of contigs No. of singletons Unique genes No. of unigenes matching GenBank database (NR)(a) No. of unigenes without match to GenBank dbEST database(b)
        matching GenBank database (NR)(c) without match to GenBank database (NR)
Total FE524602-FE527336 2735 296 1092 1388 681 (49.1%) 262 (18.9%) 404 (29.1%)
1 FE524602-FE525578 977 75 545 620 235 (37.9%) 73 (11.8%) 207 (33.4%)
2 FE525579-FE525681 103 23 14 37 24 (64.9%) 18 (48.6%) 10 (27.0%)
3 FE525682-FE525782 101 7 76 83 46 (55.4%) 19 (22.9%) 20 (24.1%)
4 FE525783-FE526029 247 64 56 120 62 (51.7%) 31 (25.8%) 36 (30.0%)
5 FE526030-FE526148 119 7 50 57 26 (45.6%) 7 (12.3%) 17 (29.8%)
6 FE526149-FE526246 98 12 5 17 11 (64.7%) 5 (29.4%) 3 (17.6%)
7 FE526247-FE526554 308 36 59 95 69 (72.6%) 25 (26.3%) 17 (17.9%)
8 FE526555-FE526754 200 30 18 48 27 (56.3%) 21 (43.8%) 15 (31.3%)
9 FE526755-FE527126 and FG235008-FG235038 372 43 248 291 162 (55.7%) 53 (18.2%) 74 (25.4%)
10 FE527127-FE527336 210 26 143 169 106 (62.7%) 34 (20.1%) 23 (13.6%)
  1. (a) Unigenes with similarity to the sequences in the nonredundant NCBI database (1e-3) using BLASTx.
  2. (b) Unigenes with no similarity to the sequences in the dbEST-NCBI database (1e-20) using BLASTn-Organism: Trichophyton rubrum (taxid:5551).
  3. (c) T. rubrum protein sequences identified in this database were excluded from this analysis.