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Table 3 Genes expressed more highly in untreated P. aeruginosa drip-flow reactor biofilms (n = 6) than in several comparator transcriptomes.

From: Physiology of Pseudomonas aeruginosa in biofilms as revealed by transcriptome analysis

   DFB* Comp.*   
Gene ID Name Rank Rank Note Description
PA0038   185 1734   hypothetical protein
PA0105-0107 coxBA 174 3225 O2 cytochrome c oxidase
PA0200   145 3494   hypothetical protein
PA0284   77 712   hypothetical protein
PA0409 pilH 56 539   Type IV pili biogenesis
PA0515-0519 nirFCMS 207 2547 O2 nitrite reduction
PA0523-0524 norCB 177 3770 O2 nitric oxide reductase
PA0586-0588   123 1848 O2 conserved hypothetical and serine protein kinase
PA0713   103 3107 O2 conserved hypothetical protein
PA717-0726   185 3323   hypothetical proteins of bacteriophage Pf1
PA0763 mucA 30 296   anti-sigma factor
PA1041   47 1850   probable outer membrane protein precursor
PA1174 napA 270 2433 O2 periplasmic nitrate reductase
PA1178 oprH 5 831   outer membrane protein H1 precursor
PA1190   105 3558   conserved hypothetical protein
PA1414   14 756   hypothetical protein
PA1431 rsaL 45 1835 O2 regulatory protein
PA1555-1556   64 1312 O2 cytochrome c oxidase
PA1592   4 67   hypothetical protein
PA1673   152 2346 O2 hypothetical protein
PA1746   173 2016 O2 hypothetical protein
PA1982-1983 exaAB 315 5317   alcohol dehydrogenase, cytochrome c550
PA2274   378 3473   putative monooxygenase
PA2381   64 1279 O2 conserved hypothetical protein
PA2485   161 2704   hypothetical protein
PA2501   133 1858   hypothetical protein
PA2622 cspD 19 591   stationary phase replication inhibitor
PA2754   140 1797   conserved hypothetical protein
PA2780-2781   205 2983   hypothetical proteins
PA2807-2808 ptrA 47 3378 Cu hypothetical and two-component repressor
PA2862 lipA 176 2785   lactonizing lipase precursor
PA2883   121 2207   hypothetical protein
PA2937   53 3144   hypothetical protein
PA3040   40 553   conserved hypothetical protein
PA3049 rmf 11 1575 O2 ribosome modulation factor
PA3126 ibpA 134 1382   heat-shock protein IbpA
PA3181   226 2020   2-keto-3-deoxy-6-phosphogluconate aldolase
PA3186-3190 oprB 68 1936   glucose uptake
PA3205   16 1033   hypothetical protein
PA3235   101 2118   conserved hypothetical protein
PA3309   33 1076 O2 universal stress protein
PA3369-3371   196 3302   hypothetical proteins
PA3412   163 3772 Cu probable transcriptional regulator
PA3415   225 2682   probable dihydrolipoamide acetyltransferase
PA3416-3417   259 2723   pyruvate dehydrogenase
PA3418 ldh 52 2352   leucine dehydrogenase
PA3515-3519   92 2804 Cu hypothetical proteins and probable lyases
PA3523   128 3765 Cu probable RND efflux membrane fusion protein
PA3552 pmrH 269 2400   lipopolysaccharide modification
PA3572   107 1616   hypothetical protein
PA3577   253 3216   hypothetical protein
PA3690-3691   57 1482 Cu probable metal-transporting P-type ATPase
PA3792 leuA 38 603   2-isopropylmalate synthase
PA3819   44 508   conserved hypothetical protein
PA3920   79 2577 Cu probable metal transporting P-type ATPase
PA3973   292 2829   probable transcriptional regulator
PA4352   114 1316 O2 conserved hypothetical protein
PA4550-4551 fimUpilV 167 2088   type 4 fimbrial biogenesis proteins
PA4577   124 2292   hypothetical protein
PA4607-4611   136 2173   hypothetical proteins
PA4739   143 1345 O2 conserved hypothetical protein
PA4773,4776 pmrB 166 2538   hypothetical and two-component sensor
PA4781-82   202 2538   probable two-component response regulator
PA5100 hutU 258 2660 O2 urocanase
PA5212   29 881   hypothetical protein
PA5427 adhA 112 2664 O2 alcohol dehydrogenase
PA5446   7 866   hypothetical protein
PA5460   118 3962   hypothetical protein
PA5475   294 2787 O2 hypothetical protein
  1. *Average Rank in drip flow biofilms (DFB) and three comparator microarray data sets (Comp. Rank) named in the Materials and Methods.