Table 2 P. aeruginosa transcriptional profiling data sets used for comparison.
From: Physiology of Pseudomonas aeruginosa in biofilms as revealed by transcriptome analysis
GEO ID | Symbol Color | Medium | n | Reference |
|---|---|---|---|---|
GSE6741 | ● 20% O2 - light green ● 2% O2 - gold ● 0.4% O2 - red ● 0% O2 + nitrate - dark green | minimal amino acids 37°C, sparged and stirred exponential phase, OD ~ 0.08 | 2 | [15] |
GSE2430 | ● untreated control - pink | BHI, 37°C, shaken; early stationary phase, OD ~ 2.8 | 2 | [18] |
GSE4152 | ● untreated control - yellow ● Cu stressed - blue | MOPS buffered LB, 37°C, early exponential phase, OD ~ 0.2 | 2 | [20] |
GSE2885 | ● OD ~ 0.2 - light gray ● OD ~ 1.3 - white ● OD ~ 2.1 (Fe limited) - purple | minimal glucose, 37°C, sparged and stirred, three points in batch culture | 2 | [22] |
GSE5604 | ● untreated control - light blue | minimal acetate, 20°C, chemostat with dilution rate 0.06 h-1 | 2 | [17] |
GSE7704 | ● control - brown | minimal citrate, 37°C, shaken, OD ~ 0.6 | 3 | [19] |
GSE5443 | ● control - dark blue | LB, 37°C | 2 | [16] |
GSE8408 | ● control - dark gray | minimal succinate and non-sulfur containing amino acids, 30°C, shaken, OD ~ 0.2 | 3 | [21] |