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Table 2 P. aeruginosa transcriptional profiling data sets used for comparison.

From: Physiology of Pseudomonas aeruginosa in biofilms as revealed by transcriptome analysis

GEO ID Symbol Color Medium n Reference
GSE6741 20% O2 - light green
2% O2 - gold
0.4% O2 - red
0% O2 + nitrate - dark green
minimal amino acids 37°C, sparged and stirred exponential phase, OD ~ 0.08 2 [15]
GSE2430 untreated control - pink BHI, 37°C, shaken; early stationary phase, OD ~ 2.8 2 [18]
GSE4152 untreated control - yellow
Cu stressed - blue
MOPS buffered LB, 37°C, early exponential phase, OD ~ 0.2 2 [20]
GSE2885 OD ~ 0.2 - light gray
OD ~ 1.3 - white
OD ~ 2.1 (Fe limited) - purple
minimal glucose, 37°C, sparged and stirred, three points in batch culture 2 [22]
GSE5604 untreated control - light blue minimal acetate, 20°C, chemostat with dilution rate 0.06 h-1 2 [17]
GSE7704 control - brown minimal citrate, 37°C, shaken, OD ~ 0.6 3 [19]
GSE5443 control - dark blue LB, 37°C 2 [16]
GSE8408 control - dark gray minimal succinate and non-sulfur containing amino acids, 30°C, shaken, OD ~ 0.2 3 [21]
  1. Additional file 1 contains a version of this table that includes colored symbols for visual identification of the symbols used in Figures 3, 5, and 6.