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Table 2 Phylogenetic information for the 16S rRNA sequences present in the 4926 and GOS datasets that matched selected chromatogram peaks shown in Figure 2

From: T-RFPred: a nucleotide sequence size prediction tool for microbial community description based on terminal-restriction fragment length polymorphism chromatograms

Dataset Peak Chromatograms Number of sequences Taxonomic group
4926 1 Cfo I, Hae III 243 Total
    146 Roseobacter
    53 Gammaproteobacteria
    36 Alphaproteobacteria
    4 Planctomycetes
    2 Betaproteobacteria
    1 Cyanobacteria
    1 Firmicutes
4926 1 Cfo I, Hae III, Alu I 124 Total
    111 Roseobacter
    7 Alphaproteobacteria
    4 Gammaproteobacteria
    2 Betaproteobacteria
4926 2 Cfo I, Hae III 207 Total
    152 SAR11
    51 Firmicutes
    1 Alphaproteobacteria
    1 Unclassified Bacteria
4926 2 Cfo I, Hae III, Alu I 148 Total
    119 SAR11
    29 Firmicutes
GOS 1 Cfo I, Hae III 263 Total
    231 Roseobacter
    18 Alphaproteobacteria
    13 Gammaproteobacteria
    1 Actinobacteria
GOS 1 Cfo I, Hae III, Alu I 243 Total
    229 Roseobacter
    12 Alphaproteobacteria
    1 Gammaproteobacteria
    1 Actinobacteria
GOS 2 Cfo I, Hae III 560 Total
    559 SAR11
    1 Alphaproteobacteria
GOS 2 Cfo I, Hae III, Alu I 269 Total
    269 SAR11
  1. Sequences that matched the fragment sizes were analyzed using 2-3 different restriction enzymes as indicated. Alphaproteobaceria sensu latu refers to any bacterial sequences in the class that were not either Roseobacter or SAR11. See Experimental Procedures in the Additional File 1 for details.
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BMC Microbiology

ISSN: 1471-2180

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