Table 1 VNTRs characteristics and primers for PCR amplification [21]
VNTRa | repeat size (bp) | Mu50 NĀ° repeats | Ā | oligos | Locus name |
|---|---|---|---|---|---|
Sa0122b | 24 | 10 | L | AGCAGTAGTGCCGTTTGCTT | spa |
| Ā | Ā | Ā | R | AAGACGATCCTTCAGTGAGCA | Ā |
Sa0266c | 81 | 6 | L | TTGGATATGAAGCGAGACCA | coa |
| Ā | Ā | Ā | R | CTTCCGATTGTTCGATGCTT | Ā |
Sa0311 | 55 | 3 | L | AGGGTTAGAGCCCGAGACAT | STAR |
| Ā | Ā | Ā | R | CACGGGATTGGAACAGAAAT | Ā |
Sa0704 | 67 | 4 | L | CGCGCGTGAATCTCTTTTAT | intergenic |
| Ā | Ā | Ā | R | AGTCCCATATCGTGCGTTAAA | Ā |
Sa0906F | 56 | 3 | L | CATGTATTCATGGGATTGCAGC | STARd |
| Ā | Ā | Ā | R | CAGATTTTC CTTCAACAATTATCAC | Ā |
Sa1132 | 63 | 6 | L | CGTGCATAATGGCTTACGAA | SAV1078 |
| Ā | Ā | Ā | R | AAGCAGCAGAAAAAGCTAAAGAA | Ā |
Sa1194 | 67 | 7 | L | AGTGCAAGCGGAAATTGAAG | intergenic |
| Ā | Ā | Ā | R | ATCGTGAAAAAGCCCAAAAA | Ā |
Sa1213F | 56 | 5 | L | GGCTGATGCTAAAGTTGCATTAGA | STAR |
| Ā | Ā | Ā | R | GTGGCATGTTCTACAAACGTAAAC | Ā |
Sa1291 | 64 | 4 | L | GGGGGAAATTCTAAGCAACC | intergenic |
| Ā | Ā | Ā | R | CGAAATTTTCCACGTCGATT | Ā |
Sa1425 | 58 | 4 | L | TCGTTATTAAACTACGAATTCTCGATT | STAR |
| Ā | Ā | Ā | R | ATTTCGRGAATGATTCAATTCAATTTT | Ā |
Sa1729b | 56 | 5 | L | TACTTAAAAATARGAATACATAATTAG | STAR |
| Ā | Ā | Ā | R | CAACAATAAATTACTTATTTGAAGTT | Ā |
Sa1866 | 159 | 3 | L | CTGTTTTGCAGCGTTTGCTA | SAV1738 |
| Ā | Ā | Ā | R | GCAACTTGAAGAAACGGTTG | Ā |
Sa2039 | 56 | 3 | L | TTCGTTCTACCCCAACTTGC | STAR |
| Ā | Ā | Ā | R | GAGCCTGGGTCATAAATTCAA | Ā |
Sa1756e | 131 | 1 | L | AATTATAGCATATTAGAGCCCCTTA | 50S ribosomal protein L27 |
Alias SIRU15 | Ā | Ā | R | ACGTAAAGGTCGCGACAAAA | Ā |