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Table 3 Predicted RpoN-binding sites in X. fastidios a genome.

From: Global gene expression under nitrogen starvation in Xylella fastidiosa: contribution of the σ54 regulon

Gene ID Position* Sequence Score Product
XF2542 -76 TGGCACACCTTCTGCT 12.38 fimbrial protein
XF1354 -122 TGGTACGGTATTTGCT 11.58 MarR family transcriptional regulator
XF0158 -127 CGGCACGTGTGTTGCT 11.32 hypothetical protein (XF0158-59-60)
XF1842# -46 TGGTATGCCAATTGCT 10.52 glutamine synthetase
XF0623 -246 TGGCACGGGAATTGAA 10.62 hypothetical protein
XF0220 -129 TGGGATGGTTCTTGCT 10.46 proline dipeptidase
XF0178 -177 TGGCATGCCAAATGCA 10.39 conserved hypothetical protein (XF0178-79)
XF0414 -189 TGGCGAGCATCTTGCA 10.29 hypothetical protein (XF0414-15)
XF1850 -7 CGGCACATGCGTTGCT 10.26 hypothetical protein (probable transposase)
XF1471 -230 CGGCACGGAATTCGCA 10.22 hypothetical protein
XF1315 -116 AGGCACTGCGGTTGCA 10.10 hypothetical protein (XF1315-relA-XF1317-18)
XF0746 -227 TGGCACTGCCAATGCA 9.93 hypothetical protein
XF1121 -82 CGGCACGACCCCTGCC 9.42 5,10-methylenetetrahydrofolate reductase
XF0010 -63 TGGTCCGGCCAGTGCA 9.36 biopolymer transport ExbB protein (exbB-exbD-exbD2-XF0013)
XF0507 -213 CGGCGCGGGTTTCGCT 9.29 hypothetical protein (XF0507-08)
XF1784 -151 TGGCACGTCAAGCGCA 9.26 hypothetical protein (ParB-like nuclease domain) (XF1784-83-82-81)
XF1943 -342 CGGCACGCTGATGGCA 9.20 histone-like protein
XF0305 -65 GGGCACCATATTTGCT 9.14 NADH dehydrogenase subunit A (nuoABCDEFGHIJKLMN)
XF1249 -207 CGGCCCGCAGCATGCT 8.97 hypothetical protein
XF1749 -27 TGGCGCGGCGTTTCCT 8.92 MFS transporter (XF1749-48-47-46)
XF0290 -30 CGGCACTGCCACTGCA 8.90 aconitate hydratase
XF2580 -109 CGGCACGGAGGCGGCA 8.81 30S ribosomal protein S2
XF2639 -43 TGGCGCGCCACTTTCT 8.79 preprotein translocase subunit SecE (secE-nusG)
XF0177 -161 TGGCCTGCATTTGGCA 8.79 hypothetical protein
XF2260 -305 TGGAACAGAAGGTGCT 8.75 alanyl dipeptidyl peptidase
XF1213 -151 CGGCTCCCCTCTTGCT 8.74 GTP-binding elongation factor protein
XF2724 -28 TGGCACAGTGCCAGCA 8.69 type I restriction-modification system (XF2724-23-22-21)
XF2677 -164 GGGCGTGATGCTTGCA 8.65 L-ascorbate oxidase
XF1609 -164 TGGCAGGTGTTGTGCT 8.60 MFS glucose/galactose transporter (XF1609-10-11)
XF2745 -15 CGGCGTGGCCGGTGCA 8.59 hypothetical protein
XF0695 -50 AGGCGCGCCGTTCGCA 8.59 hypothetical protein
XF1355 -223 TGGCAGTGCCGGTGCA 8.51 hypothetical protein
XF2501 -183 CGGCACGGAGGGGGCA 8.44 hypothetical protein (phage-related protein)
XF0710 -183 CGGCACGGAGGGGGCA 8.44 hypothetical protein (phage-related protein)
XF2093 -263 TGGCATCCAAAGTGCA 8.40 HlyD family secretion protein (XF2093-94)
XF1640 -56 TGGCAGTGCTACTGCA 8.40 ankyrin-like protein
XF2008 -44 CGGCACGCAACACGCA 8.30 hypothetical protein
XF2733 -86 TGGCAACCGCATTGCG 8.28 hypothetical protein
XF2408 -25 AGGCCCCGCAGTTGCG 8.28 hypothetical protein (XF2408-09-10)
XF0567 -16 TGGAGCACTCTTTGCA 8.22 hypothetical protein
XF2358 -36 TGGAACGCAATCTGCG 8.17 23S rRNA 5-methyluridine methyltransferase
XF0726 -255 TGGCGTGGTGGCCGCA 8.14 hypothetical protein (XF0726-27-28-29)
XF2202 -80 GGGGATGGGTGTTGCT 8.11 hypothetical protein
XF0625 -46 TGGAATTGCTATTGCT 8.11 hypothetical protein
XF0641 -179 TGGCAAAGCGGTTGAA 8.07 DNA methyltransferase (XF0641-40)
  1. * Distance between the -12 region of the promoter relative to the initiation codon.
  2. # Predicted RpoN-binding site detected upstream of the re-annotated initiation codon of XF1842 (glnA).