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Table 4 SNP analysis for the ten loci.

From: Multi-locus analysis of human infective Cryptosporidium species and subtypes using ten novel genetic loci

Gene name Gene
annotation
PCR product size Number of SNPs detected Average number of nucleotides
per SNP
Number of Species specific SNPs (%) Number of non synonymous SNPs (%)
Cgd2_80 ABC transporter family protein 266 bp 7 38 6 (85.5%) 1 (14.3%)
Cgd2_2430 Ximpact ortholog conserved protein seen in bacteria and eukaryotes 389 bp 13 30 9 (69.3%) 3 (23.1%)
Cgd6_200 Oocyst wall protein 8 447 bp 8 56 6 (75%) 2 (25%)
Cgd6_5020 Protein with WD40 repeats 271 bp 2 136 2 (100%) 1 (50%)
Cgd8_2370 Adenosine kinase like ribokinase 685 bp 12 58 8 (66.7%) 1 (8.4%)
Chro.20156 Hypothetical protein 247 bp 6 42 5 (83.4%) 5 (83.4%)
Chro.50317 RNA polymerase A/beta'/A'' subunit 752 bp 15 51 10 (66.7%) 10 (66.7%)
Chro.50330 Leucyl tRNA synthetase 368 bp 3 123 3 (100%) 0 (0%)
Chro.30149 Ubiquitin-protein ligase 1 331 bp 0 331   
Chro.50457 Erythrocyte membrane-associated antigen 394 bp 12 33 12 (100%) 5 (41.7%)
  1. This table details the number of SNPs detected by PCR products sequence analysis of ten novel genetic loci. For each gene, the number and proportion of species-specific SNPs were provided. The effect of the genetic polymorphism on amino acid composition was also indicated.