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Table 4 SNP analysis for the ten loci.

From: Multi-locus analysis of human infective Cryptosporidium species and subtypes using ten novel genetic loci

Gene name

Gene

annotation

PCR product size

Number of SNPs detected

Average number of nucleotides

per SNP

Number of Species specific SNPs (%)

Number of non synonymous SNPs (%)

Cgd2_80

ABC transporter family protein

266 bp

7

38

6 (85.5%)

1 (14.3%)

Cgd2_2430

Ximpact ortholog conserved protein seen in bacteria and eukaryotes

389 bp

13

30

9 (69.3%)

3 (23.1%)

Cgd6_200

Oocyst wall protein 8

447 bp

8

56

6 (75%)

2 (25%)

Cgd6_5020

Protein with WD40 repeats

271 bp

2

136

2 (100%)

1 (50%)

Cgd8_2370

Adenosine kinase like ribokinase

685 bp

12

58

8 (66.7%)

1 (8.4%)

Chro.20156

Hypothetical protein

247 bp

6

42

5 (83.4%)

5 (83.4%)

Chro.50317

RNA polymerase A/beta'/A'' subunit

752 bp

15

51

10 (66.7%)

10 (66.7%)

Chro.50330

Leucyl tRNA synthetase

368 bp

3

123

3 (100%)

0 (0%)

Chro.30149

Ubiquitin-protein ligase 1

331 bp

0

331

  

Chro.50457

Erythrocyte membrane-associated antigen

394 bp

12

33

12 (100%)

5 (41.7%)

  1. This table details the number of SNPs detected by PCR products sequence analysis of ten novel genetic loci. For each gene, the number and proportion of species-specific SNPs were provided. The effect of the genetic polymorphism on amino acid composition was also indicated.