Molecular diversity of Mycobacterium tuberculosis isolates from patients with tuberculosis in Honduras

BMC Microbiology

Table 1 Description of predominant shared-types (SITs) in this study and their worldwide distribution according SITVIT2 database

SIT (Clade) Octal Number¹	Total (%) in this study	Distribution in Regions with ≥5% of a given SITs²	Distribution in countries with ≥5% of a given SITs³
33 (LAM3) 776177607760771	43 (20.9)	AFRI-S 32.0, AMER-S 22.1, AMER-N 15.9, EURO-S 13.6, EURO-W 5.4	ZAF 32.0, USA 15.7, BRA 8.9, ESP 8.8, ARG 5.6, PER 5.5
42 (LAM9) 777777607760771	21 (10.2)	AMER-S 29.8, AMER-N 16.3, EURO-S 12.8, EURO-W 7.0, AFRI-N 5.1	USA 15.25, BRA 10.3, COL 7.9, ITA 6.7
53 (T1) 777777777760771	16 (7.8)	AMER-N 19.8, AMER-S 14.5, EURO-W 12.8, EURO-S 10.0, ASIA-W 8.7, AFRI-S 6.5	USA 17.3, ZAF 6.4, ITA 5.1
67 (H3) 777777037720771	18 (8.7)	AMER-N 46.3, AMER-C 35.2, AMER-S 13.0, CARI 5.6	USA 44.4, HND 33.3, GUF 12.9
92 (X3) 700076777760771	5 (2.4)	AFRI-S 50.3, AMER-N 23.0, AMER-S 9.0	ZAF 50.3, USA 20.6, BRA 5.4
206 (LAM9) 740777607760771	6 (2.9)	AMER-N 50.0, AMER-C 42.9, EURO-W 7.1	USA 50.0, HND 42.9, BEL 7.1
376 (LAM3) 376177607760771	12 (5.8)	AMER-N 44.7, AMER-C 25.5, AMER-S 21.3	USA 44.68, HND 25.53, VEN 17.0
546 (X3) 700036777560771	5 (2.4)	AMER-N 57.1, AMER-C 35.7, AMER-S 7.1	USA 57.1, HND 35.7, PER 7.1
1328 (H1) 777777034020771	5 (2.4)	AMER-C 55.6, CARI 22.2, AMER-N 22.2	HND 55.6, USA 22.2, HTI 22.2

¹ Predominant shared types (SITs) were defined as SITs representing 2% or more strains in this dataset (i.e., 4 strains or more strains in this study).
² Worldwide distribution is only reported for regions with ≥5% of a given SITs as compared to their total number in the SITVIT2 database. Regions description [16]: AFRI (Africa), AMER (Americas), ASIA (Asia), EURO (Europe), and CARIB (Caribbean), subdivided in: C (Central), N (Northern), S (Southern) and W (Western).
³ Distribution by country is only shown for SITs with ≥5% in a given country: ARG (Argentina), BEL (Belgium), BRA (Brazil), COL (Colombia), ESP (Spain), GUF (French Guiana), HND (Honduras), HTI (Haiti), ITA (Italy), PER (Peru), USA (United States), VEN (Venezuela), ZAF (South Africa).

ISSN: 1471-2180