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Table 1 Description of predominant shared-types (SITs) in this study and their worldwide distribution according SITVIT2 database

From: Molecular diversity of Mycobacterium tuberculosis isolates from patients with tuberculosis in Honduras

SIT
(Clade)
Octal Number1
Total (%) in this study Distribution in Regions with ≥5% of a given SITs2 Distribution in countries with ≥5% of a given SITs3
33
(LAM3)
776177607760771
43 (20.9) AFRI-S 32.0, AMER-S 22.1, AMER-N 15.9, EURO-S 13.6, EURO-W 5.4 ZAF 32.0, USA 15.7, BRA 8.9, ESP 8.8, ARG 5.6, PER 5.5
42
(LAM9)
777777607760771
21 (10.2) AMER-S 29.8, AMER-N 16.3, EURO-S 12.8, EURO-W 7.0, AFRI-N 5.1 USA 15.25, BRA 10.3, COL 7.9, ITA 6.7
53
(T1)
777777777760771
16 (7.8) AMER-N 19.8, AMER-S 14.5, EURO-W 12.8, EURO-S 10.0, ASIA-W 8.7, AFRI-S 6.5 USA 17.3, ZAF 6.4, ITA 5.1
67
(H3)
777777037720771
18 (8.7) AMER-N 46.3, AMER-C 35.2, AMER-S 13.0, CARI 5.6 USA 44.4, HND 33.3, GUF 12.9
92
(X3)
700076777760771
5 (2.4) AFRI-S 50.3, AMER-N 23.0, AMER-S 9.0 ZAF 50.3, USA 20.6, BRA 5.4
206
(LAM9)
740777607760771
6 (2.9) AMER-N 50.0, AMER-C 42.9, EURO-W 7.1 USA 50.0, HND 42.9, BEL 7.1
376
(LAM3)
376177607760771
12 (5.8) AMER-N 44.7, AMER-C 25.5, AMER-S 21.3 USA 44.68, HND 25.53, VEN 17.0
546
(X3)
700036777560771
5 (2.4) AMER-N 57.1, AMER-C 35.7, AMER-S 7.1 USA 57.1, HND 35.7, PER 7.1
1328
(H1)
777777034020771
5 (2.4) AMER-C 55.6, CARI 22.2, AMER-N 22.2 HND 55.6, USA 22.2, HTI 22.2
  1. 1 Predominant shared types (SITs) were defined as SITs representing 2% or more strains in this dataset (i.e., 4 strains or more strains in this study).
  2. 2 Worldwide distribution is only reported for regions with ≥5% of a given SITs as compared to their total number in the SITVIT2 database. Regions description [16]: AFRI (Africa), AMER (Americas), ASIA (Asia), EURO (Europe), and CARIB (Caribbean), subdivided in: C (Central), N (Northern), S (Southern) and W (Western).
  3. 3 Distribution by country is only shown for SITs with ≥5% in a given country: ARG (Argentina), BEL (Belgium), BRA (Brazil), COL (Colombia), ESP (Spain), GUF (French Guiana), HND (Honduras), HTI (Haiti), ITA (Italy), PER (Peru), USA (United States), VEN (Venezuela), ZAF (South Africa).