Genetic and phenotypic diversity in Burkholderia: contributions by prophage and phage-like elements

BMC Microbiology

Table 3 RNASeq analysis of gene expression of phage genes in Bp DD503.

Gene	Annotation	Expression value (RPKM)*
phi1026bp03	putative portal protein	3,601
phi1026bp05	putative major capsid protein	4,743
phi1026bp14	putative tail length tape measure protein	1,038
phi1026bp16	hypothetical protein	3,986
phi1026bp27	putative DNA adenine methylase	21,563
phi1026bp28	hypothetical protein	199,000
phi1026bp29	PAAR repeat-containing protein	186,000
phi1026bp30	VRR-NUC domain protein	132,500
phi1026bp31	hypothetical protein	77,624
phi1026bp32	hypothetical protein	8,751
phi1026bp33	hypothetical protein	17,084
phi1026bp34	putative site-specific integrase	5,746
phi1026bp36	hypothetical protein	23,220
phi1026bp37	hypothetical protein	80,994
phi1026bp38	hypothetical protein	16,224
phi1026bp44	hypothetical protein	2,494
phi1026bp48	hypothetical protein	2,501
phi1026bp51	hypothetical protein	26,846
phi1026bp59	putative LysR family transcriptional regulator	18,809
phi1026bp60	putative major facilitator family permease	29,669
phi1026bp61	hypothetical protein	33,472
phi1026bp62	hypothetical protein	46,783
phi1026bp63	hypothetical protein	10,273
phi1026bp64	hypothetical protein	219,500
phi1026bp65	hypothetical protein	220,000
phi1026bp78	hypothetical protein	4,184
phi1026bp79**	putative transcriptional regulator	59,976
phi1026bp81	XRE familiy putative transcriptional regulator	53,561
phi1026bp82	addiction module toxin, RelE/StbE family	92,307

*Genes in bold belong to morons. Only genes with 10 or more reads are displayed, genes with fewer than 10 reads are considered non-expressed since they are not above noise level. Expression values are measured as reads per kilobase of coding sequence per million reads (RPKM). Number of reads and expression values are from one Illumina run, but are representative of 3 runs.
**Candidate phage repressor.

ISSN: 1471-2180