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Table 1 Sequenced Staphylococcus aureus genomes

From: Genetic variation in Staphylococcus aureus surface and immune evasion genes is lineage associated: implications for vaccine design and host-pathogen interactions

Lineage Strain Host Status GenBank Accession number Published reference
CC ST      
1 1 MSSA476* H I BX571857 [48]
  1 MW2* H I BA000033 [49]
  1 TCH70 H S NZ_ACHH00000000 http://www.ncbi.nlm.nih.gov
5 5 A5937 H I NZ_ACKC00000000 http://www.broadinstitute.org/
  5 A6224 H I NZ_ACKE00000000 http://www.broadinstitute.org/
  5 A6300 H I NZ_ACKF00000000 http://www.broadinstitute.org/
  5 A8115 H S NZ_ACKG00000000 http://www.broadinstitute.org/
  5 A8117 H S NZ_ACYO00000000 http://www.broadinstitute.org/
  5 A9719 H U NZ_ACKJ00000000 http://www.broadinstitute.org/
  5 A9763 H U NZ_ACKK00000000 http://www.broadinstitute.org/
  5 A9781 H U NZ_ACKL00000000 http://www.broadinstitute.org/
  5 A9299 H U NZ_ACKH00000000 http://www.broadinstitute.org/
  5 A10102 H U NZ_ACSO00000000 http://www.broadinstitute.org/
  5 CF-Marseille H I NZ_CABA00000000 [50]
  5 ED98* A I CP001781 [20]
  5 Mu3* H I AP009324 [51]
  5 Mu50* H I BA000017 [52]
  5 N315* H S BA000018 [52]
  105 JH1* H I CP000736 [53]
  105 JH9* H I CP000703 [53]
7 7 USA300 TCH959* H S NZ_AASB00000000 http://www.ncbi.nlm.nih.gov
8 8 A5948 H U NZ_ACKD00000000 http://www.broadinstitute.org/
  8 A9765 H U NZ_ACSN00000000 http://www.broadinstitute.org/
  8 NCTC 8325* H S CP000253 [54]
  8 Newman* H I AP009351 [55]
  8 USA300 FPR3757* H I CP000255 [56]
  8 USA300 TCH1516* H S CP000730 [57]
  250 COL* H S? CP000046 [58]
10 10 H19 H U NZ_ACSS00000000 http://www.broadinstitute.org/
  145 D139 H U NZ_ACSR00000000 http://www.broadinstitute.org/
22 22 EMRSA15/5096* H I   http://www.sanger.ac.uk/pathogens
30 30 55/2053 H U NZ_ACJR00000000 http://www.broadinstitute.org/
  30 58-424 H U NZ_ACUT00000000 http://www.broadinstitute.org/
  30 65-1322 H U NZ_ACJS00000000 http://www.broadinstitute.org/
  30 68-397 H U NZ_ACJT00000000 http://www.broadinstitute.org/
  30 A017934/97 H U NZ_ACYP00000000 http://www.broadinstitute.org/
  30 Btn1260 H U NZ_ACUU00000000 http://www.broadinstitute.org/
  30 C101 H U NZ_ACSP00000000 http://www.broadinstitute.org/
  30 E1410 H U NZ_ACJU00000000 http://www.broadinstitute.org/
  30 M1015 H U NZ_ACST00000000 http://www.broadinstitute.org/
  30 M876 H U NZ_ACJV00000000 http://www.broadinstitute.org/
  30 M899 H U NZ_ACSU00000000 http://www.broadinstitute.org/
  30 MN8 H S NZ_ACJA00000000 http://www.ncbi.nlm.nih.gov
  30 TCH60 H S NZ_ACHC00000000 http://www.ncbi.nlm.nih.gov
  30 WBG10049 H V NZ_ACSV00000000 http://www.broadinstitute.org/
  30 WW2703/97 H U NZ_ACSW00000000 http://www.broadinstitute.org/
  34 C160 H U NZ_ACUV00000000 http://www.broadinstitute.org/
  36 MRSA252* H I BX571856 [48]
42 42 C427 H U NZ_ACSQ00000000 http://www.broadinstitute.org/
45 45 A9635 H U NZ_ACKI00000000 http://www.broadinstitute.org/
72 72 TCH130 H S NZ_ACHD00000000 http://www.ncbi.nlm.nih.gov
151 151 RF122/ET3-1* B I AJ938182 [59]
239 239 JKD6008 H I NZ_ABRZ00000000 http://www.ncbi.nlm.nih.gov
  239 JKD6009 H I NZ_ABSA00000000 http://www.ncbi.nlm.nih.gov
  239 0582/TW20* H I FN433596 http://www.sanger.ac.uk/pathogens
398 398 S0385 * P/H I AM990992 http://www.ncbi.nlm.nih.gov
425 425 LGA251* B I   http://www.sanger.ac.uk/pathogens
431 431 M809 H U NZ_ACUS00000000 http://www.broadinstitute.org/
  1. 58 S. aureus genomes have been sequenced to date from14 different clonal complex lineages (CC). CC5, CC8 and CC30 are the most extensively sequenced with17, 8 and17 genomes currently available. Sequence type (ST) of each strain is shown, and strains with fully annotated genomes are denoted with an (*). Host origin of the strain is denoted as avian (A), bovine (B), human (H) and porcine (P). Infection status of the strain is shown as a strain isolated from an infection (I), a strain isolated from another source (S) or a strain for which the origin is publically unavailable (U). GenBank accession numbers are shown where possible, as well as published references or corresponding websites.