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Table 1 Sequenced Staphylococcus aureus genomes

From: Genetic variation in Staphylococcus aureus surface and immune evasion genes is lineage associated: implications for vaccine design and host-pathogen interactions

Lineage

Strain

Host

Status

GenBank Accession number

Published reference

CC

ST

     

1

1

MSSA476*

H

I

BX571857

[48]

 

1

MW2*

H

I

BA000033

[49]

 

1

TCH70

H

S

NZ_ACHH00000000

http://www.ncbi.nlm.nih.gov

5

5

A5937

H

I

NZ_ACKC00000000

http://www.broadinstitute.org/

 

5

A6224

H

I

NZ_ACKE00000000

http://www.broadinstitute.org/

 

5

A6300

H

I

NZ_ACKF00000000

http://www.broadinstitute.org/

 

5

A8115

H

S

NZ_ACKG00000000

http://www.broadinstitute.org/

 

5

A8117

H

S

NZ_ACYO00000000

http://www.broadinstitute.org/

 

5

A9719

H

U

NZ_ACKJ00000000

http://www.broadinstitute.org/

 

5

A9763

H

U

NZ_ACKK00000000

http://www.broadinstitute.org/

 

5

A9781

H

U

NZ_ACKL00000000

http://www.broadinstitute.org/

 

5

A9299

H

U

NZ_ACKH00000000

http://www.broadinstitute.org/

 

5

A10102

H

U

NZ_ACSO00000000

http://www.broadinstitute.org/

 

5

CF-Marseille

H

I

NZ_CABA00000000

[50]

 

5

ED98*

A

I

CP001781

[20]

 

5

Mu3*

H

I

AP009324

[51]

 

5

Mu50*

H

I

BA000017

[52]

 

5

N315*

H

S

BA000018

[52]

 

105

JH1*

H

I

CP000736

[53]

 

105

JH9*

H

I

CP000703

[53]

7

7

USA300 TCH959*

H

S

NZ_AASB00000000

http://www.ncbi.nlm.nih.gov

8

8

A5948

H

U

NZ_ACKD00000000

http://www.broadinstitute.org/

 

8

A9765

H

U

NZ_ACSN00000000

http://www.broadinstitute.org/

 

8

NCTC 8325*

H

S

CP000253

[54]

 

8

Newman*

H

I

AP009351

[55]

 

8

USA300 FPR3757*

H

I

CP000255

[56]

 

8

USA300 TCH1516*

H

S

CP000730

[57]

 

250

COL*

H

S?

CP000046

[58]

10

10

H19

H

U

NZ_ACSS00000000

http://www.broadinstitute.org/

 

145

D139

H

U

NZ_ACSR00000000

http://www.broadinstitute.org/

22

22

EMRSA15/5096*

H

I

 

http://www.sanger.ac.uk/pathogens

30

30

55/2053

H

U

NZ_ACJR00000000

http://www.broadinstitute.org/

 

30

58-424

H

U

NZ_ACUT00000000

http://www.broadinstitute.org/

 

30

65-1322

H

U

NZ_ACJS00000000

http://www.broadinstitute.org/

 

30

68-397

H

U

NZ_ACJT00000000

http://www.broadinstitute.org/

 

30

A017934/97

H

U

NZ_ACYP00000000

http://www.broadinstitute.org/

 

30

Btn1260

H

U

NZ_ACUU00000000

http://www.broadinstitute.org/

 

30

C101

H

U

NZ_ACSP00000000

http://www.broadinstitute.org/

 

30

E1410

H

U

NZ_ACJU00000000

http://www.broadinstitute.org/

 

30

M1015

H

U

NZ_ACST00000000

http://www.broadinstitute.org/

 

30

M876

H

U

NZ_ACJV00000000

http://www.broadinstitute.org/

 

30

M899

H

U

NZ_ACSU00000000

http://www.broadinstitute.org/

 

30

MN8

H

S

NZ_ACJA00000000

http://www.ncbi.nlm.nih.gov

 

30

TCH60

H

S

NZ_ACHC00000000

http://www.ncbi.nlm.nih.gov

 

30

WBG10049

H

V

NZ_ACSV00000000

http://www.broadinstitute.org/

 

30

WW2703/97

H

U

NZ_ACSW00000000

http://www.broadinstitute.org/

 

34

C160

H

U

NZ_ACUV00000000

http://www.broadinstitute.org/

 

36

MRSA252*

H

I

BX571856

[48]

42

42

C427

H

U

NZ_ACSQ00000000

http://www.broadinstitute.org/

45

45

A9635

H

U

NZ_ACKI00000000

http://www.broadinstitute.org/

72

72

TCH130

H

S

NZ_ACHD00000000

http://www.ncbi.nlm.nih.gov

151

151

RF122/ET3-1*

B

I

AJ938182

[59]

239

239

JKD6008

H

I

NZ_ABRZ00000000

http://www.ncbi.nlm.nih.gov

 

239

JKD6009

H

I

NZ_ABSA00000000

http://www.ncbi.nlm.nih.gov

 

239

0582/TW20*

H

I

FN433596

http://www.sanger.ac.uk/pathogens

398

398

S0385 *

P/H

I

AM990992

http://www.ncbi.nlm.nih.gov

425

425

LGA251*

B

I

 

http://www.sanger.ac.uk/pathogens

431

431

M809

H

U

NZ_ACUS00000000

http://www.broadinstitute.org/

  1. 58 S. aureus genomes have been sequenced to date from14 different clonal complex lineages (CC). CC5, CC8 and CC30 are the most extensively sequenced with17, 8 and17 genomes currently available. Sequence type (ST) of each strain is shown, and strains with fully annotated genomes are denoted with an (*). Host origin of the strain is denoted as avian (A), bovine (B), human (H) and porcine (P). Infection status of the strain is shown as a strain isolated from an infection (I), a strain isolated from another source (S) or a strain for which the origin is publically unavailable (U). GenBank accession numbers are shown where possible, as well as published references or corresponding websites.